Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00016 ATGGCATTGGAGGTTACGCAGGTTCTTCTAAATGCACAGTCAATTGATGCAAGTGTGAGGAAGCAGGCAGAAGACAGTTTAAGGCAATTCCAGGAGCAAAACCTTCCCAGTTTCTTGCTGTCTCTCTCTGGTGAATTAGGAAGTGAGGAAAAGCCAGTTGACAGTCGTAAATTAGCAGGTCTGATACTTAAGAATGCACTGGATGCTAAGGAACAACATAGAAAATTTGAGCTCATTCAGAGATGGCTATCACTGGACAGCAATGTGAAGACCCAGATAAAGGCATGCTTGTTGAATACACTGTCTTCAGCAGTAGCTGATGCTAGGTCCACAGCATCCCAAGTCGTTGCAAAGATTGCGGGCATTGAGTTGCCTCATAAGCAATGGCCTGAATTGATAGGTTCACTATTGCTAAACGTTCATCAACAATCGTCCCATGTCAAACAAGCCACCTTGGAGACTCTTGGTTATTTATGTGAGGAAGTTTCTCCAGATGTCATAGATCAAGATCAAGTGAACAGAATATTGACAGCTGTTGTTCAGGGAATGAATGCATCTGAAGGAAACAATGATGTACGACTTGCTGCTACTCGATCATTGTACAATGCTCTTGGGTTTGCTCAAGCAAACTTTAGCAATGATATGGAGCGTGATTATATCATGAGAGTTGTTTGTGAGGCCACACTATCCCCTGAAGTGAGGATACGCCAGGCAGCTTTTGAATGTTTGGTCTCAATTGCGTCGACATACTATGACAAATTGGCTCGTTACATCCAAGATATTTTTGGCATTACTGCAAAGGCTGTTAAGGAAGATGAAGAACCTGTTGCTCTTCAGGCCATTGAATTCTGGAGTTCTATTTGTGATGAGGAGATAGATATCTTGGAAGAGTATGGGGATGATTTTACTGGGGATTCTGATATACCGTGCTTTTATTTCATCAAGCAGGCACTACCTGCGCTTGTGCCCATGTTACTTGAGACTCTTCTTAAGCAAGAAGAGGATCAGGATCAAGATGAAGGGGCTTGGAACATTGCCATGGCTGGGGGTACATGTCTTGGGCTAGTTGCACGAACAGTGGGTGACGATATTGTTCCACTTGTTATGCCATTCATTGAAGAGAACATAACAAAATCGGATTGGAGGCAGAGGGAGGCAGCCACTTATGCTTTTGGCTCAATTTTGGAGGGGCCTGCTCCAGAAAAATTAATGCCAATTGTTAATGTGGCCTTAACGTTCATGCTGACTGCCTTGACTCAGGATCCAAATAACCATGTGAAGGACACAACTGCATGGACCCTTGGACGGATATTTGAATTCCTTCATGGCTCAAATATAGATACACCCATTATTAATCAGGCTAACTGCCAACAGATCATTACAGTTTTGCTTCAGAGCATGAAGGATGTGCCAAATGTCGCTGAGAAAGCCTGTGGTGCTCTCTATTTTCTTGCTCAGGGTTATGAAGATGTTGGCCCATCATCTCCTTTAACTCCATTTTTTCAAGAAATTGTTCAGTCCCTTTTGACTGTTACTCACAGAGAAGATGCTGGGGAATCACGTTTGAGGACTGCTGCATATGAAACATTGAATGAAGTTGTGAGGTGTTCAACTGAAGAAACAGCACCAATGGTGCTGCAACTGGTTCCTGTCATTATGATGGAATTGCACAATACTCTTGAGGGGCAAAAGCTTTCATCTGATGAAAGGGAGAGACAGGGGGAACTACAAGGCCTGCTCTGTGGGTGCTTACAAGTTCTTATTCAGAAACTAGGATCATCAGAGCCAAATAAATATGCCTTCATGCAGTATGCGGACCAAATAATGGGACTTTTCCTGAGGGTATTTGCTTGCAGAAATGCCACTGTACATGAGGAAGCAATGCTGGCGATTGGAGCTCTTGCCTATTCAACGGGTCCAGATTTTGGTAAATACATGACCGAGTTCTATAAATATATAGAAATGGGACTTCAAAATTTTGAGGAGTACCAAGTTTGTGCTGTCACTGTTGGTGTGGTAGGGGACATATGCAGGGCTTTGGAGGATAAGATTTTGCCCTACTGTGATGGAATTATGACTCAGCTGCTCAAGAATTTATCCAGTGATCAATTGCATCGTTCTGTTAAGCCCCCTATTTTCTCATGCTTTGGTGATATAGCACTGGCTATAGGAGAGAATTTTGAGAAGTACTTGATGTATGCGATGCCCATGCTTCAAAGGGCAGCAGAGCTATCTGCACACACAGCAGGTATTGATGATGAAATGACCGAGTATACAAATTCTTTGAGAAATGGGATTTTGGAGGCATATTCAGGGATCTTCCAAGGTTTCAAGAGCTCTCCAAAAACTCAGCTTTTGGTCCCATATGCCCCTCATATACTTCAATTCTTGGATAGTATTTACATGAGAAAAGACATGGATGAAGTTGTTATGAAAACTGCCATTGGGGTCCTTGGAGATCTGGCGGACACACTGGGGAGCAATGCCGGTTCTTTGATTCAGCAGTCTGTCTCAAGCAAAGACTTTTTGAGTGAATGCTTGTCCTCCGATGATCATTTGATTAAAGAATCTGCTGAATGGGCTAAGTTGGCCATCAGCCGTGCCATTTCAATTTAG 2616 43.08 MALEVTQVLLNAQSIDASVRKQAEDSLRQFQEQNLPSFLLSLSGELGSEEKPVDSRKLAGLILKNALDAKEQHRKFELIQRWLSLDSNVKTQIKACLLNTLSSAVADARSTASQVVAKIAGIELPHKQWPELIGSLLLNVHQQSSHVKQATLETLGYLCEEVSPDVIDQDQVNRILTAVVQGMNASEGNNDVRLAATRSLYNALGFAQANFSNDMERDYIMRVVCEATLSPEVRIRQAAFECLVSIASTYYDKLARYIQDIFGITAKAVKEDEEPVALQAIEFWSSICDEEIDILEEYGDDFTGDSDIPCFYFIKQALPALVPMLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFIEENITKSDWRQREAATYAFGSILEGPAPEKLMPIVNVALTFMLTALTQDPNNHVKDTTAWTLGRIFEFLHGSNIDTPIINQANCQQIITVLLQSMKDVPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRCSTEETAPMVLQLVPVIMMELHNTLEGQKLSSDERERQGELQGLLCGCLQVLIQKLGSSEPNKYAFMQYADQIMGLFLRVFACRNATVHEEAMLAIGALAYSTGPDFGKYMTEFYKYIEMGLQNFEEYQVCAVTVGVVGDICRALEDKILPYCDGIMTQLLKNLSSDQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQRAAELSAHTAGIDDEMTEYTNSLRNGILEAYSGIFQGFKSSPKTQLLVPYAPHILQFLDSIYMRKDMDEVVMKTAIGVLGDLADTLGSNAGSLIQQSVSSKDFLSECLSSDDHLIKESAEWAKLAISRAISI 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 136983 140561 + Lsi09G000160.1 Lsi09g00016 669629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00016 871 SUPERFAMILY ARM repeat 4 861 IPR016024 -
Lsi09g00016 871 Pfam Importin-beta N-terminal domain 23 102 IPR001494 GO:0006886|GO:0031267
Lsi09g00016 871 Gene3D - 1 871 IPR011989 -
Lsi09g00016 871 ProSiteProfiles Importin-beta N-terminal domain profile. 23 103 IPR001494 GO:0006886|GO:0031267
Lsi09g00016 871 PANTHER IMPORTIN BETA 3 869 IPR040122 GO:0006606
Lsi09g00016 871 SMART IBN_N_2 23 103 IPR001494 GO:0006886|GO:0031267
Lsi09g00016 871 PANTHER IMPORTIN SUBUNIT BETA-1 3 869 IPR027140 GO:0006913
Lsi09g00016 871 Pfam HEAT-like repeat 381 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00016 K14293 KPNB1, IPO1; importin subunit beta-1 - csv:101203580 1661.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00293 Lsi-Chr3:3552239 Lsi09g00016 Lsi-Chr9:136983 4.70E-17 dispersed
Lsi09g00016 Lsi-Chr9:136983 Lsi10g00510 Lsi-Chr10:7271485 1.84E-23 dispersed
Lsi09g00014 Lsi-Chr9:120350 Lsi09g00016 Lsi-Chr9:136983 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1022 . Blo15g00084 . . . Bpe07g01019 . . . . Cma02g01125 Cma15g01022 Car02g00933 Car15g00954 . . . . . . . . . . Cla01g00035 Cam01g0032 Cec01g0031 Cco01g0033 Clacu01g0035 Cmu01g0033 Cre09g2473 Cone1ag0996 Cone5ag0701 . . . Csa05g00040 Chy09g01444 . . . Bda06g00790 Bda15g00788 . Bpe12g00347 Bma08g00391 Bma12g01215 . Cmo02g01157 Cmo15g01084 . . . . . . Bhi12g00657 . . . . . . . . . . . . . Lsi09g00016 . . Cme09g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001919 2 2 2 2 2 2 2 2 2 2 2 2 4 3 2 3 2 3 0 2 2 2 2 4 2 3 2 4 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00016 Lsi_Chr09 FPKM 46.828045 49.539543 52.433586 52.119354 43.078136 39.529266 41.25103 28.337809 26.121944 26.4123