Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00017 ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTATGGCTTGGTCGGATAGAGTGTCCAACCTAGTGGGTAATTATAAGGTGTGGGCTTGGGCCTCATGGACGGAAAAGCCCAAATATTGGTTTCTGGATAACTCCGAACTCACCAGGTCAAAATCAGCTCGACTCAGTCCACTTCGTCCTCGCCCTTTATCGAGCTCTTGTTCACCACGAGCTGAGCTTTTTCGGCTGCTCAACTCTCCAGTCTCCACAATGGCGACTTTCCTTCTTCTCTCTTCTCAATCTTCCGCCTGTCACAGGATGAGCGAATTCTGTCTTTGCGTGCAGTCATTGCAGTTGCAAAAGGGCATCGCATGCTCTTCAGTTTTCTTCCAGAAACAGAAATATAATATCAAGCTTTATGCTGTACCTGTTAGAGCCTTTGCTTGTCGCTTTGCACCAACACCTTCTGCTTCTAGTAGAGTTGATTTGGGGGGTCGGAGGAAACATATTTCTTCTGCCTTCACTGCTCCAAATGGATATCAAAGGCCTGATCTCATGCACAGCCGTACTGATGGGAATAGAATGACTGAATTTGAAGTTCAGTTGGAAGAATTATTCAATGAAGTCAGATTGATGACAATGAGCGGGAGGAAGAATGATGCTGTAGAGCTACTTCAAGCTAATTATGAAGCTGTAAAAGAACAGATGGAATCAGGTGCTATTGGCATTGAACAAGCTGCTGTTCTTGACATCGTGGCTTTGGGGTATATAACTGTTGGAGACTTGAAGTTTGTTGCTTCTGTATTGGATATATTGAACAAGGTTGTTGACAGTCTGAAGGACAGTGAACCCTTTCTGGATTCAGTGCTTCTGCATATGGGGAGCATGTACTCAACTTTAAAGAAGTTTGAGAAATCAATATCTGCGTACAAGAGGGCTATTGATATCATAGAGAAGAAGAGTGGAGAAGACAGTAGCTTTCTTATCACTCCAATTTTAGGGATGGCTAAAGTTTTTAGTACCATTGGAAGAACTGGAAAGGCAGTAGAGTTTTACCATCGTGCAATTTCACTTTTGGAATCAAGCAGAGGCTTTGAGAACGAGGATTTGGTTATACCTTTGTTTGGTCTGGGCAATCTTATGCTGAAAGAAGGAAAAGGCAAGGATGCAGAAACTTGTTTTGCTAGGATTGTGAACATATATAAAAAGTTATATGGAGAGAAAGATGGAAAGGTCGGAATGGCTATGTACTCTCTGGCTAATGCAAAATGTGCAAGAGGGGAAGCAGTCGAAGCTGTTACCTTATATAGAAGAGCTTTGCAGATTATCAAGGATTCAAATGATATGGCTTTAGATGATAGCGTGATGGAGAAGATGAGGATTGATTTGGCAGAGCTATTGCATGTTGTAGGAAGAGGGAATGAAGGCAGAGAACTTCTAGAAGAGTGTTTGTTGATCAATGAAAGGTTGAAAGGAAAAGAGCATCCCAGCTCAGTGAAGCACCTTGTAAACCTTGCAGCTTCTTATTCACGGTCAAAGAATTATGCAGAGGCCGAGCGTTTGTTGCGAATTGGATTGGACATTATGATAAAGGCAGTGGGACCTGATGATCAATCAATTACAGTCCCAATGTTGAATCTTGCTGTCACTCTTTACAATCTAAAACAAGACAATGATGCCGAGCAACTTGCGCTGGAAGTCTTGCGAATACGGGAAAATGCTTTTGGAAAAGATTCTCTTCCTGTTGGTGAGGCTCTAGATTGTTTGGTTTCAATTCAGAGCAGGCTAGGAAAGGATGAAAACGAGCTACTGGAGCTGCTGAAGAGAGTTCTTAGAATCCAGGAGAGAGAGTTCGGGTATGATGGTAAAGAGGTCATTGATACCCTCAAGAAAATAGTGTTCTACATGGAAAAACTAGGAATGAAAGATGAGAAATTTCCACTTCAAAAACGACTGTCCATGCTGCGGATGAAATTCAAGAACCAGATGCAATACTAA 2154 42.76 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIMKALLTIALAASSRDLVCHGRSGRRERPLAPPVRMAWSDRVSNLVGNYKVWAWASWTEKPKYWFLDNSELTRSKSARLSPLRPRPLSSSCSPRAELFRLLNSPVSTMATFLLLSSQSSACHRMSEFCLCVQSLQLQKGIACSSVFFQKQKYNIKLYAVPVRAFACRFAPTPSASSRVDLGGRRKHISSAFTAPNGYQRPDLMHSRTDGNRMTEFEVQLEELFNEVRLMTMSGRKNDAVELLQANYEAVKEQMESGAIGIEQAAVLDIVALGYITVGDLKFVASVLDILNKVVDSLKDSEPFLDSVLLHMGSMYSTLKKFEKSISAYKRAIDIIEKKSGEDSSFLITPILGMAKVFSTIGRTGKAVEFYHRAISLLESSRGFENEDLVIPLFGLGNLMLKEGKGKDAETCFARIVNIYKKLYGEKDGKVGMAMYSLANAKCARGEAVEAVTLYRRALQIIKDSNDMALDDSVMEKMRIDLAELLHVVGRGNEGRELLEECLLINERLKGKEHPSSVKHLVNLAASYSRSKNYAEAERLLRIGLDIMIKAVGPDDQSITVPMLNLAVTLYNLKQDNDAEQLALEVLRIRENAFGKDSLPVGEALDCLVSIQSRLGKDENELLELLKRVLRIQEREFGYDGKEVIDTLKKIVFYMEKLGMKDEKFPLQKRLSMLRMKFKNQMQY 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 140609 154609 + Lsi09G000170.1 Lsi09g00017 669630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00017 717 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 254 702 - -
Lsi09g00017 717 SUPERFAMILY TPR-like 323 580 IPR011990 GO:0005515
Lsi09g00017 717 Gene3D Tetratricopeptide repeat domain 510 716 IPR011990 GO:0005515
Lsi09g00017 717 ProSiteProfiles TPR repeat profile. 339 372 IPR019734 GO:0005515
Lsi09g00017 717 Pfam Tetratricopeptide repeat 596 631 - -
Lsi09g00017 717 SMART tpr_5 465 498 IPR019734 GO:0005515
Lsi09g00017 717 SMART tpr_5 593 626 IPR019734 GO:0005515
Lsi09g00017 717 SMART tpr_5 551 584 IPR019734 GO:0005515
Lsi09g00017 717 SMART tpr_5 381 414 IPR019734 GO:0005515
Lsi09g00017 717 SMART tpr_5 423 456 IPR019734 GO:0005515
Lsi09g00017 717 SMART tpr_5 339 372 IPR019734 GO:0005515
Lsi09g00017 717 Coils Coil 352 372 - -
Lsi09g00017 717 Pfam Tetratricopeptide repeat 341 412 - -
Lsi09g00017 717 Pfam Tetratricopeptide repeat 511 580 - -
Lsi09g00017 717 Pfam Tetratricopeptide repeat 428 496 - -
Lsi09g00017 717 SUPERFAMILY TPR-like 512 650 IPR011990 GO:0005515
Lsi09g00017 717 Gene3D Tetratricopeptide repeat domain 339 509 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00017 - - - cmax:111491290 922.154
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1027 . . . . . . . . . . Cma02g01123 . . . . Cpe05g00595 . . . . . . . . Cla01g00037 Cam01g0035 Cec01g0034 Cco01g0036 Clacu01g0038 Cmu01g0035 Cre09g2471 . . Cone14ag0004 . . Csa05g00043 Chy09g01443 . . . Bda06g00789 . . . . . . Cmo02g01152 . . . . . . . Bhi12g00649 . . Lac11g0164 Hepe06g0796 . Lcy12g0140 . . . . . . . Lsi09g00017 . . Cme09g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009135 1 6 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00017 Lsi_Chr09 FPKM 8.521876 6.906363 9.124573 8.84754 10.499846 10.043254 10.606717 10.780496 9.679859 9.985698