Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00018 ATGGCTGCAGCAGAAGCAAAGCCTCCACGAAAACATTCGGAAAACATCTTCCCTGCCCAAGATGATGGCTACAGAGATTCAAAATTATTGTCAAAACGCAATGCTGCATCTGATCACAGAGCACATGGGTTTAGTTCTCCAGCCAAAGCTGCTCATATCCCAACATCTTATCAAACAGTTGACCGTGAGTTGAATTCAGCAAAGCAACCTGATTTTCAGCACCATAAGGGGTTTGCAGTAGGATTGGCAAAAACTTTGCAGGCTGAAATGGATAATTCAAGTGTCCGGATTGTAAGTAAGACAACTGTATCTGGTGAGGAACATCAAAACATGGGAGAACTTGAACATCGAGTTAGCAAGGGCTATGTTGCCACTGAGGCTGTGAATAAAAATGAATCGGTAAACATGACTAAGAAAACAGACTGCATGGATGAGTTCCACTACATAGAGGATCATTTTACAGACTTGTACAATTTTGACGGTCAGATCTCCAAGCAAGGAGAGAAGGTCTCTTTTGATCTGGAGTCGCACTGGACAAGAATTGAGAAGACTAAGCCATGGTGGCGTTCTGCTAGTAAAGATGAGTTGGCTTCCTTCGTAGCCCGGAAGTCTCTTGAAAACTTTGGAAATTGTGACCTTCCTCAACCACGAACCAAACACCAGAGCAAGGATGAATCTACCTGTCTTGAGTGTGTTGATCAAGATTGCCTTCTCACTTCACCGTTTACTGAGATGCAAGTCTCCACTTTGGATGGATATAACAGGGGAATGCACCCTTCAGGTGGCATGGGTGAGAGACAGTTCGTTGTTGGTAGTGTAGGTCACATGCTGCGTCATCAAGATCATTTCAGCGTTAGCAGAACTGGTAATGAAGAAAACAACTCAAGTAGTATTTCAAATCTGAATTATAGCAAAGCACAATTGTTGGAAGCGCTATGCCATTCACAAACTCGAGCAAGGGAAGCTGAGAAAGCCGCACAAGAAGCAGATACAGAGAAGAAGCACATTGTCTCACTCTTTCTCAGAGAAGCCACCCAACTTTTTGCTTATAAGCAGTGGTTCCAGTTGCTGCAGTTACAGAACATTTGCCTTCAACTTAGGAACAAAGATGAACCAACCACTGGTCTGTTCTCAGATGTCTTGCCTTGGGTCCCATGTAAAGATAGGCAGTTCAATCAACCTAAAAACAGAAGGAAGAAAAGGGACCGAGACCGTCGTAAATTTACAATGTACGACATTGCTTTCGCCGTGGGATTGGGTCTTGCTGGTGCCAGTTTGCTCCTCGGATGGACAACAGGTTGGTTGCTTCCAAATATGCCCTTCATCGAGGTCAATTCCAGCACCGCTGCTGCGGAGGACGCCAAGATCAACTCAGCAATCAAAATTTTCTACAGAACTTACGGACGCGGATCGACCAAGGTTCTTCTTATCATAGGTCTCTTCAAGATTGTTCCATTCTTCTGTGTTTTCCCTTTTCATTTCTCCTTTTTTGGATTGGCCGGAACCCACGATTCATGGGGCCCCCAAATCAAAGGGCTTACAGGGACCGACGTGCCCAATGACGACGGCGATCGGAATGCCGGCCATGTCGGCGAAGAACCCACCTTCGAGGATGGTGGTGGGATCGAGGTTTGTGCATTTGATAATCGGGGAATGGGTCGGAGCTCCGTTCCCGCCAAAAAATCTGAATATACAACAAAGATAATGGCCAAGGATGCCATTGCTTTAATGGATCATTTGGGGTGGGAAAAGGCTCACATTTTTGGTCATTCCATGGGAGGTATGATAGCTTGCAAATTAGCAGCTATGGCGCCCAAAAGAGTCAAGTCACTGGCCATGCTCAATGTAACTGGTGGAGGTTTTCAATGTTGCCCCAAGCTTGACAGGCAAATGTTCGACATTGCAGTCAGATTCTTAAAGGCGAAGACTCCTGAACAAAGGGCTAGTGTTGATTTGGATACCCACTATTCGAAGGAATATCTTGAAGAGTATGTCGGATTTGAAAAAAGAAGAACAATATTATATCGGGAATATGTTAAAGGTATATCAGCAACAGGAATGCAATCTAATGATGGTTTTGCGGGTCAAGTCAATGCATGCTGGACACATACAGTGACAAGAAAAGAGATCGAATGCCTTCGGTCTGCTGGATTTCTTGTATCAGTCATTCATGGCAGGCACGATGTTATTGCTCAGATATACTATGCTAGAAGACTTGCAGAGAAGCTGTATCCTGTTGCTAGAATGGTAGATCTCCACGGAGGTCATCTAGTCAGTCGCGAGAGAACCGAAGAGGTAAATCAAGCTCTTCTTGACTTAATCAGAGCCTCAGAAACAAAGATGAGTCCATATGACTGGACAAACTTGCCAAAGAAAAGCTCATGGTGGATGGAGGAGAGAATGGCTTTTGTAACAGTGAAGACTGAAGGAGGAAGCAGCAGTATCTCCTCCAAACCTTACTTAGAGACTCCATCTTTTCTTCTTGTATATCTTTGGTCTGATTCTTTTGGTGTTCGAGTATCTCCGGAACACACTCAAAAGCTTGAAACCGGTCCGAGTCGGAGCCTCCCTTACATGAATAAACCTTCCAAAGACCCTAAATTTATAAAGAGTCTGCTTCATTTTTGCTATGGACAATGCTCCAATCATCAAAGTGAAGTTGGGGAATGA 2670 44.42 MAAAEAKPPRKHSENIFPAQDDGYRDSKLLSKRNAASDHRAHGFSSPAKAAHIPTSYQTVDRELNSAKQPDFQHHKGFAVGLAKTLQAEMDNSSVRIVSKTTVSGEEHQNMGELEHRVSKGYVATEAVNKNESVNMTKKTDCMDEFHYIEDHFTDLYNFDGQISKQGEKVSFDLESHWTRIEKTKPWWRSASKDELASFVARKSLENFGNCDLPQPRTKHQSKDESTCLECVDQDCLLTSPFTEMQVSTLDGYNRGMHPSGGMGERQFVVGSVGHMLRHQDHFSVSRTGNEENNSSSISNLNYSKAQLLEALCHSQTRAREAEKAAQEADTEKKHIVSLFLREATQLFAYKQWFQLLQLQNICLQLRNKDEPTTGLFSDVLPWVPCKDRQFNQPKNRRKKRDRDRRKFTMYDIAFAVGLGLAGASLLLGWTTGWLLPNMPFIEVNSSTAAAEDAKINSAIKIFYRTYGRGSTKVLLIIGLFKIVPFFCVFPFHFSFFGLAGTHDSWGPQIKGLTGTDVPNDDGDRNAGHVGEEPTFEDGGGIEVCAFDNRGMGRSSVPAKKSEYTTKIMAKDAIALMDHLGWEKAHIFGHSMGGMIACKLAAMAPKRVKSLAMLNVTGGGFQCCPKLDRQMFDIAVRFLKAKTPEQRASVDLDTHYSKEYLEEYVGFEKRRTILYREYVKGISATGMQSNDGFAGQVNACWTHTVTRKEIECLRSAGFLVSVIHGRHDVIAQIYYARRLAEKLYPVARMVDLHGGHLVSRERTEEVNQALLDLIRASETKMSPYDWTNLPKKSSWWMEERMAFVTVKTEGGSSSISSKPYLETPSFLLVYLWSDSFGVRVSPEHTQKLETGPSRSLPYMNKPSKDPKFIKSLLHFCYGQCSNHQSEVGE 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 156771 163734 + Lsi09G000180.1 Lsi09g00018 669631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00018 889 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 443 792 - -
Lsi09g00018 889 Pfam alpha/beta hydrolase fold 541 616 IPR000073 -
Lsi09g00018 889 PRINTS Epoxide hydrolase signature 601 614 IPR000639 GO:0003824
Lsi09g00018 889 PRINTS Epoxide hydrolase signature 587 600 IPR000639 GO:0003824
Lsi09g00018 889 PRINTS Epoxide hydrolase signature 541 556 IPR000639 GO:0003824
Lsi09g00018 889 PRINTS Epoxide hydrolase signature 751 773 IPR000639 GO:0003824
Lsi09g00018 889 PANTHER EPOXIDE HYDROLASE 443 792 - -
Lsi09g00018 889 MobiDBLite consensus disorder prediction 1 48 - -
Lsi09g00018 889 Gene3D alpha/beta hydrolase 449 774 IPR029058 -
Lsi09g00018 889 SUPERFAMILY alpha/beta-Hydrolases 498 772 IPR029058 -
Lsi09g00018 889 MobiDBLite consensus disorder prediction 7 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00018 - - - csv:101203096 691.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00816 Lsi-Chr5:12649665 Lsi09g00018 Lsi-Chr9:156771 8.14E-07 dispersed
Lsi09g00018 Lsi-Chr9:156771 Lsi03g01085 Lsi-Chr3:20747176 2.31E-09 dispersed
Lsi05g02133 Lsi-Chr5:28162678 Lsi09g00018 Lsi-Chr9:156771 1.32E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1029 . Blo15g00085 . . . Bpe07g01018 . . . . Cma02g01122 Cma15g01024 Car02g00931 Car15g00957 . Cpe05g00597 . . . . . . . . Cla01g00038 Cam01g0037 Cec01g0036 Cco01g0038 Clacu01g0039 Cmu01g0037 Cre09g2470 Cone1ag0993 . Cone14ag0005 Cone15ag0008 . Csa05g00046 Chy09g01442 . . . Bda06g00788 . . . . Bma12g01206 . Cmo02g01150 Cmo15g01087 . . . . . Cpe13g00318 Bhi12g00645 . . Lac11g0162 . . Lcy12g0138 . . . . . . . Lsi09g00018 . . Cme09g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002285 1 4 2 1 1 2 3 2 2 1 1 1 1 2 2 3 2 2 3 1 2 2 1 2 2 1 2 6 6 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00018 Lsi_Chr09 FPKM 35.591747 37.554207 75.027199 70.437668 25.61738 26.343327 25.461452 31.299433 30.200678 28.959291