Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00020 ATGGCTAAGAAAGGAGGCAGCTGGTTCTTTGCTGTGAGAAAGGTCTTCAAACCTTCTCCTCCCACCCTTCCTCAAACTCAAACTAAGAAATGTGAAGAACAGGGTCCTGAAGTTGTGTCTTTTCAGCATTTTCCAGCAACCGAGAGCTCTCCTGAGAGCACCAATTCTACGCCATTAACAGCCACTGACGATAGAAACCATGCCATCGCAGTGGCTGCCGCCACTGCTGCAGCGGCTGAGGCTGCGGTGGCGGCAGCTCAGGCGGCGGCAAAGGTTGTTCGGTTGGCTGGCTATGGCCGCCCATACTCCAAGGAAGAAAGAGCTGTGACTGTTATTCAATCTTGCTATAGAGGTCACTTGGCTCGATGTGCCTTGCGTGCATTGAAAGGTCTAGTAAGGCTACAAGCACTCGTACGTGGTTATAACGTACGTAAACAAGCACAAATGACAATGCGATGCATGCAAGCGTTAGTTCGTGTTCAAACTCGAGTTCGAGCACGCAGGCTTCAACTAGCACATGACAAGTTTCGAAGAAAAATCGAAGACGTCGAAGAAAAAGAAGAACGGTTCAAACAAAAACACGACAAGCTGAGGATTTCCCACGAAAAATATGAAATGGAAGCTCAAAGTACGGAGAAAAATAGAAGCCTTTCTTCAAAGAAATATGAACCCGGTCCGATTTATGAACACGAAAACCGGCGTACAACGCAATGGGGTTGGAGTTCGTTGGACCGTTGGATGTCGTCTCAGCCGTCTCATGTTCACGACGACGTGTCGGAGAAGACTGTTGAAATGAACTTGGACTCGGGCCCAAACTCGGCCCATATTCCGAGCTACATGGCCCCAACTCAATCGGCCAAGGCCAAGGCCCGGAATCTGAGTGCAGTGAAACCGCAAAGCCCACTTTTGAGCCCATCAACGAGGAAAAGTTGGGCTCCTGACTCGTCGAGTTCTACTGTTAACCAGGCCCAATACGGCCCAATAAGAAAAAGTAACGTGAGAAATACCCAATTACATGGTAGTGGTATTACAGGCCAAGACCCAGATTACTATGGTGGTGACGAGTGGGCCTTTCCTCCTGGAGCCCATGGTTGGAGATGA 1101 49.32 MAKKGGSWFFAVRKVFKPSPPTLPQTQTKKCEEQGPEVVSFQHFPATESSPESTNSTPLTATDDRNHAIAVAAATAAAAEAAVAAAQAAAKVVRLAGYGRPYSKEERAVTVIQSCYRGHLARCALRALKGLVRLQALVRGYNVRKQAQMTMRCMQALVRVQTRVRARRLQLAHDKFRRKIEDVEEKEERFKQKHDKLRISHEKYEMEAQSTEKNRSLSSKKYEPGPIYEHENRRTTQWGWSSLDRWMSSQPSHVHDDVSEKTVEMNLDSGPNSAHIPSYMAPTQSAKAKARNLSAVKPQSPLLSPSTRKSWAPDSSSSTVNQAQYGPIRKSNVRNTQLHGSGITGQDPDYYGGDEWAFPPGAHGWR 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 171229 174705 - Lsi09G000200.1 Lsi09g00020 669633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00020 366 MobiDBLite consensus disorder prediction 291 366 - -
Lsi09g00020 366 Gene3D - 105 148 - -
Lsi09g00020 366 Pfam IQ calmodulin-binding motif 106 126 IPR000048 GO:0005515
Lsi09g00020 366 Pfam IQ calmodulin-binding motif 132 147 IPR000048 GO:0005515
Lsi09g00020 366 PANTHER IQ-DOMAIN 21 5 324 - -
Lsi09g00020 366 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Lsi09g00020 366 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Lsi09g00020 366 PANTHER IQ-DOMAIN 5-RELATED 5 324 - -
Lsi09g00020 366 MobiDBLite consensus disorder prediction 202 227 - -
Lsi09g00020 366 MobiDBLite consensus disorder prediction 297 343 - -
Lsi09g00020 366 Coils Coil 166 214 - -
Lsi09g00020 366 SMART iq_5 104 126 IPR000048 GO:0005515
Lsi09g00020 366 SMART iq_5 127 148 IPR000048 GO:0005515
Lsi09g00020 366 Pfam Protein of unknown function (DUF4005) 264 335 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00020 - - - mcha:111024607 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01722 Lsi-Chr4:24557528 Lsi09g00020 Lsi-Chr9:171229 6.22E-16 dispersed
Lsi09g00020 Lsi-Chr9:171229 Lsi03g02046 Lsi-Chr3:31790437 1.98E-25 dispersed
Lsi09g01826 Lsi-Chr9:27079684 Lsi09g00020 Lsi-Chr9:171229 1.19E-16 dispersed
Lsi07g01074 Lsi-Chr7:16101139 Lsi09g00020 Lsi-Chr9:171229 2.84E-18 transposed
Lsi05g00106 Lsi-Chr5:1805842 Lsi09g00020 Lsi-Chr9:171229 1.13E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1037 . . . Bda07g01935 Bpe03g00191 . . Bma14g02008 Cmo16g00052 . Cma02g01119 . Car02g00929 . Sed01g3489 Cpe05g00598 Cpe14g00036 Bhi01g01494 Tan01g0090 Cmetu09g1788 . . Mch10g0056 . Cla01g00041 Cam01g0039 Cec01g0038 Cco01g0040 Clacu01g0041 Cmu01g0039 Cre09g2468 Cone1ag0985 Cone5ag0691 Cone14ag0010 Cone15ag0011 . Csa05g00047 Chy09g01440 Cme06g01146 . Blo09g00025 . . . . . . . Cmo02g01149 . Cma16g00043 . Car16g00041 Car18g01244 . . Bhi12g00643 . . Lac11g0159 Hepe06g0793 . Lcy12g0136 Cla05g00973 Cam05g1064 Cec05g1070 Cco05g1063 Clacu05g1057 Cmu05g1008 Cre05g1085 Lsi09g00020 Csa03g01982 Chy06g01197 Cme09g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013743 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00020 Lsi_Chr09 FPKM 45.468616 43.183533 18.237801 16.652319 0.0 0.0 0.0 0.154563 0.0 0.138006