Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00023 ATGATCAACAATAACTACAACAAGCTCCACTCCTCCCGCTCCGTCGACTCTACTCCGGCCACCTCCTTCCACCTTTCCTCCAATGATCCCCCACCCCCCTCCTCCTCCCACCTCCCTCGCTCTCGTGTCCTCATCATCTCCTTCCTCTCCGTTTTCCTCATTGCTGCCTCTGTCGTTTCTGCAGCCGTTCTCGTCCGGTCTCGCATCGCATCGAACCAACCCCATTTCCCACACAACAACCCCTCCCAAGCTATCTCCCGTGCCTGCAGCCACACTCTCTACCCATCTCTCTGCCTCTCTTCTCTTCTCTCCTTCCCTGGCTCTCTCTCCGCCGATGTTCATGATCTTGTTCATATCTCTCTCAACTTAACTCTTCAACATCTCACTAAAGCTCTCTATTCCACTTCTCAAATCCCTATCTCCCAAATCTCTAACGACCCTTTAGCCCATTCCGCTTATGAAGACTGTATGGAGCTTCTAAACGACGCCGTTGATGCTTTTTCTCTCTCTCTCTTCTCTCCTGAAGCTTCTAATCATGATGTCATGACGTGGCTTAGTGCGGCATTGACTTACCATGACACGTGTACCGATGGATTTGCGGATGTGGCTGACTTGGCAGTTAAGGATCAGGTAGAGGCGAAGTTGAGTGATTTGTCTGAGATGATTAGTAATTCTTTGGCTATATTTTCTGGGTTTGGTGGTGGAGATTTGCCGGTGCAGAATAGGCGACGCCGGTTGATGGAGAGTGGTGCCCAGCCGTGGACGGCGGAGAATGGTGGTGATGGGGGTTTTCCACAGTGGCTAAGTGGGAAGGATAGGAGGCTTTTGGCTTCTCCTATATCGTCGATTCAGGCGGATATTGTGGTGGCGAAGGATGGTTCTGGAAAATTCAAGACGGTGGCTGAGGCCATTGAGGCGGCTCCGTCCTCGAGTGGCCGCCGGATTGTCATCTACATTAAGGCCGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAAGTTGATGTTTGTGGGAGATGGAAAGGGCATAACGGTCATTTCAGGTGGCAAAAGTGTTTTTGACAAAGTTACCACTTTTCGCACTGCCACCTTTGGACCAGGCAAGCACCAAGCCGTGGCATTGCGCTTGAGCGCTGACCACGCTGTGGTATACCGTTGCAACATCATCGGTTATCAAGACACTCTCTACGTGCATTCAAACCGTCAATTCTTTCGGGAGTGCGACATCTACGGTACCGTCGATTTCATCTTCGGCAATGCGGTCGTGGTATTCCAAAGTTGCAACATCTATGCTCGGAAGCCAATGCCGGGGCAAAAGAACACCATCACAGCCCAAGACCGGAAGGACCCAAACCAAAATACCGGAATTTCCATCCATGCTTGCAAGATCGTTGCCACCGACGACCTTGAAGCCTCCAAGGGTTCTTTCCCTACATTCCTCGGCCGTCCTTGGAAATTATACTCTAGAGTCGTCTACATGGTATCTTCCATGGGCGACCATATTCACCCACGTGGCTGGCTCGAGTGGCAAGGCTCTTTTGCTCTCGACACTCTTTACTATGGCGAGTATATGAATTCTGGGCCGGGCGCCGCCGTGGGGCAGCGGGTCAAGTGGCCGGGTTATCGGGTCATAACTTCCACGGTGGAAGCCTCCAAATTTACCGTTGGACAATTTATTTATGGCTCTTCTTGGTTGCCTTCTACTGGAGTTTCGTTTTCAGCTGGATTATCCGCTAACTAA 1752 50.97 MINNNYNKLHSSRSVDSTPATSFHLSSNDPPPPSSSHLPRSRVLIISFLSVFLIAASVVSAAVLVRSRIASNQPHFPHNNPSQAISRACSHTLYPSLCLSSLLSFPGSLSADVHDLVHISLNLTLQHLTKALYSTSQIPISQISNDPLAHSAYEDCMELLNDAVDAFSLSLFSPEASNHDVMTWLSAALTYHDTCTDGFADVADLAVKDQVEAKLSDLSEMISNSLAIFSGFGGGDLPVQNRRRRLMESGAQPWTAENGGDGGFPQWLSGKDRRLLASPISSIQADIVVAKDGSGKFKTVAEAIEAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTKLMFVGDGKGITVISGGKSVFDKVTTFRTATFGPGKHQAVALRLSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMPGQKNTITAQDRKDPNQNTGISIHACKIVATDDLEASKGSFPTFLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSAN 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 197201 202177 - Lsi09G000230.1 Lsi09g00023 669636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00023 583 SMART PMEI_2 80 228 IPR006501 GO:0004857
Lsi09g00023 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 230 IPR035513 -
Lsi09g00023 583 Pfam Pectinesterase 286 565 IPR000070 GO:0030599|GO:0042545
Lsi09g00023 583 PANTHER PECTINESTERASE 37 580 - -
Lsi09g00023 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 82 232 IPR035513 -
Lsi09g00023 583 PANTHER PECTINESTERASE 37 580 - -
Lsi09g00023 583 SUPERFAMILY Pectin lyase-like 283 579 IPR011050 -
Lsi09g00023 583 CDD PMEI-like_3 88 234 - -
Lsi09g00023 583 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Lsi09g00023 583 MobiDBLite consensus disorder prediction 1 36 - -
Lsi09g00023 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 230 IPR006501 GO:0004857
Lsi09g00023 583 MobiDBLite consensus disorder prediction 1 31 - -
Lsi09g00023 583 Pfam Plant invertase/pectin methylesterase inhibitor 84 228 IPR006501 GO:0004857
Lsi09g00023 583 Gene3D - 280 580 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00023 Lsi-Chr9:197201 Lsi09g00498 Lsi-Chr9:5184085 1.02E-143 dispersed
Lsi02g01732 Lsi-Chr2:23002588 Lsi09g00023 Lsi-Chr9:197201 4.17E-77 transposed
Lsi05g00099 Lsi-Chr5:1736313 Lsi09g00023 Lsi-Chr9:197201 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00023 - - csv:101216816 1015.76