Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00024 ATGGCGATTATCTCCGAGTACGAAGAGAAGGAAGAAATCACGAAGCCAAAGAAGCCTTCCTCCTCCTCCACTTCATCATCTTCTTCATCGGCCAAGCCTTCTCAGTTCAATGCCAACTTTGACCCTTCAAATCCTCTAGGGTTTTTGGAGAAGGTGTTCGATTTTCTTGCCAATGAGACCGATTTTCTCTCCAGGGATAGAGTTGAGAAGGATATCGAGACGTTAGTGCGCAGAGCTGTGGAGAAGAGAAAGAAGCATGAGGAGTCGCTTGAGCTTAAAGGAAAGCCCGGGAAGAGGATTAAGGAGGAGGTGAGGAGTGTCAAGCAGGAAGCTGCACCGGAGGTGAAGGCTGTGAAGGAGGAGACGAAGACTATGGCATCACCGCCGGAAGAGAAAGCGGGGGTGAAGTTGGGGAACAACACGGAGGGGGAGAAGAAAGAGGAGAACGGACCAAGAGGTGAGCATTCCTCTTTCTCTTCCTCTACTTGTTGGTTCTTTATTTTGTCAATTTGTTATTTGGATTGGACTGGCTTTGTTGATGTTGTACCATCTGGAAGAGTTCCCAACAAAGGTAATGGCCTTGATATGGACAACTACTCTTGGACACAGTCTCTACAAGAAGTCAATGTTAATGTACCTGTACCCAAAGGAACCAAGTCCAGGTTTGTGGTTTGTGAGATCAAGAAGAATCATCTCAAAGTTGGACTAAAGGGTCAACCACCAGTGATAGATGGAGAGCTTTGTCATATTGTCAAGCCAGATGACTGTTATTGGAGCATAGAGGATGAGAGCATCGTTTCTATTCTTTTGACCAAGCACAACCAAATGGAGTGGTGGAAATATTTAGTGAAAGGTGATCCTGAGATTGATACTCAGAAGGTTGAACCTGAGAACAGCAAACTATCTGATTTAGATCCAGAAACACGACAAACTGTTGAAAAGATGATGTTTGATCAAAGGCAGAAATCTATGGGACTCCCAACCAGTGATGAGATGCAGAAACAAGAGATTCTGAAGAAGTTCATGTCTGAGCATCCGGAGATGGACTTTTCAAGGGCAAAGATATCATAA 1071 44.72 MAIISEYEEKEEITKPKKPSSSSTSSSSSSAKPSQFNANFDPSNPLGFLEKVFDFLANETDFLSRDRVEKDIETLVRRAVEKRKKHEESLELKGKPGKRIKEEVRSVKQEAAPEVKAVKEETKTMASPPEEKAGVKLGNNTEGEKKEENGPRGEHSSFSSSTCWFFILSICYLDWTGFVDVVPSGRVPNKGNGLDMDNYSWTQSLQEVNVNVPVPKGTKSRFVVCEIKKNHLKVGLKGQPPVIDGELCHIVKPDDCYWSIEDESIVSILLTKHNQMEWWKYLVKGDPEIDTQKVEPENSKLSDLDPETRQTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMSEHPEMDFSRAKIS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 216868 222486 + Lsi09G000240.1 Lsi09g00024 669637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00024 356 Coils Coil 65 85 - -
Lsi09g00024 356 MobiDBLite consensus disorder prediction 103 158 - -
Lsi09g00024 356 MobiDBLite consensus disorder prediction 18 41 - -
Lsi09g00024 356 ProSiteProfiles CS domain profile. 194 283 IPR007052 -
Lsi09g00024 356 SUPERFAMILY HSP20-like chaperones 188 298 IPR008978 -
Lsi09g00024 356 MobiDBLite consensus disorder prediction 1 41 - -
Lsi09g00024 356 Pfam CS domain 198 272 IPR007052 -
Lsi09g00024 356 PANTHER NUCLEAR MOVEMENT PROTEIN NUDC 25 356 IPR037898 -
Lsi09g00024 356 PANTHER NUCLEAR MIGRATION PROTEIN NUDC 25 356 - -
Lsi09g00024 356 MobiDBLite consensus disorder prediction 103 127 - -
Lsi09g00024 356 MobiDBLite consensus disorder prediction 1 17 - -
Lsi09g00024 356 CDD p23_NUDC_like 199 283 - -
Lsi09g00024 356 MobiDBLite consensus disorder prediction 137 153 - -
Lsi09g00024 356 Gene3D - 190 317 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00024 K25866 NUDC; nuclear migration protein NudC - csv:101222013 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01285 Lsi-Chr2:17183037 Lsi09g00024 Lsi-Chr9:216868 9.76E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g914 . . . . . . . . . . . . . . . Cpe05g00602 . . . . . . . . . . . . . . . . . . . . . Chy09g01436 . . . . . . Bpe12g00353 . . . . . . . . . . Cpe13g00313 Bhi12g00632 . . Lac11g0151 Hepe06g0789 . Lcy12g0130 . . . . . . . Lsi09g00024 . . Cme09g01982
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006262 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00024 Lsi_Chr09 FPKM 3.355581 3.290233 4.647242 4.286485 1.957837 2.091971 2.052019 25.435368 25.963886 25.510752