Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00028 ATGGAAGCCGACGCAGGAAGAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGCGAGTAATGGGATTCTTGCAAAGAAGGAGATCCCTTCTTGTTGCTTAAAGGCTAGGGCTTCAGTCCCTGAGCTTGAGGCCAAGTGCCATTCCACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGCTTGCTTCTGGAGAAGCACACTCCCTCCAAGTAGAGTCTATATTATTTAAAGGGAAGTCAGAGTTCCAAGAAGTGGTCGTTTTTGAGTCCACTACATATGGGAAAGTACTTGTTCTAGATGGCATTGTCCAGTTAACTGAGAAAGATGAGTGTGCCTATCAGGAGATGATTACTCATCTGCCCCTCTGTTCAATTCCATCTCCCAAAACGGTTCTTGTTGTTGGTGGTGGTGATGGTGGAGTTCTGAGTGAAATCGCTCGCCACAACTCTGTAGAGCATATAGACATATGTGAGATAGATAAGATGGTCATTGATGTATCTAAGGAGTTTTTTCCTGATTTAGCTATAGGATTCGAGGATCCCCGCGTCCACCTTCACGTTGGTGATGCTGTTGAATTCCTACGGTGTGCACCAAGAGGGAAATATGATGCAATCATCGTTGATTCCTCAGACCCTGTTGGGCCTGCTCAGGAGCTAGTTGAGAAGCCATTCTTTGAGACGATAGCTAAAGCTTTGAAGCCTGGTGGTGTCCTCTGTAACATGGCAGAAAGTATGTGGCTACATACACATCTTATTGAAGATATGATCTCCATTTGCCGTGAAATTTTCAAAGGATCCGTTCATTATGCATGGGGGAGTGTTCCAACTTATCCAAGTGGTGTGATCGGTTTTTTGCTATGCTCAACCGAAGGGCCGCCTGTTGATTTTAAAAATCCTATTAATCCCATTGAGAAGTTAGAAGGTGCAGTCAAGCATAAAAAAGATCTCAAGTTCTACAATTCAGAGATACATTCGGCTGCTTTTGCCTTGCCATCATTTCTGAGGAAGGAGGTGAAGGCACTTGTTGATTATCCGAACCCATCACAAAACTGA 1053 44.63 MEADAGRGLGCQKTMDGKASNGILAKKEIPSCCLKARASVPELEAKCHSTVVSGWFSEPQLASGEAHSLQVESILFKGKSEFQEVVVFESTTYGKVLVLDGIVQLTEKDECAYQEMITHLPLCSIPSPKTVLVVGGGDGGVLSEIARHNSVEHIDICEIDKMVIDVSKEFFPDLAIGFEDPRVHLHVGDAVEFLRCAPRGKYDAIIVDSSDPVGPAQELVEKPFFETIAKALKPGGVLCNMAESMWLHTHLIEDMISICREIFKGSVHYAWGSVPTYPSGVIGFLLCSTEGPPVDFKNPINPIEKLEGAVKHKKDLKFYNSEIHSAAFALPSFLRKEVKALVDYPNPSQN 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 272284 278593 + Lsi09G000280.1 Lsi09g00028 669641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00028 350 Hamap Polyamine aminopropyltransferase [speE]. 54 339 IPR001045 GO:0003824
Lsi09g00028 350 Pfam Spermidine synthase tetramerisation domain 54 107 IPR035246 -
Lsi09g00028 350 Gene3D Spermidine synthase, tetramerisation domain 46 104 IPR037163 -
Lsi09g00028 350 Gene3D Vaccinia Virus protein VP39 105 342 IPR029063 -
Lsi09g00028 350 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 289 IPR030374 -
Lsi09g00028 350 PANTHER SPERMINE SYNTHASE 1 346 - -
Lsi09g00028 350 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 131 144 IPR030373 -
Lsi09g00028 350 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 59 338 IPR029063 -
Lsi09g00028 350 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 346 IPR001045 GO:0003824
Lsi09g00028 350 TIGRFAM speE: spermidine synthase 55 333 IPR001045 GO:0003824
Lsi09g00028 350 CDD AdoMet_MTases 143 238 - -
Lsi09g00028 350 Pfam Spermine/spermidine synthase domain 110 297 - -
Lsi09g00028 350 PIRSF Spermidine_synth 42 343 IPR030668 GO:0006595
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00028 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101222254 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00359 Lsi-Chr2:3061914 Lsi09g00028 Lsi-Chr9:272284 2.31E-87 dispersed
Lsi04g00535 Lsi-Chr4:4946208 Lsi09g00028 Lsi-Chr9:272284 5.67E-145 dispersed
Lsi06g01542 Lsi-Chr6:25771974 Lsi09g00028 Lsi-Chr9:272284 3.69E-89 dispersed
Lsi09g00028 Lsi-Chr9:272284 Lsi11g00166 Lsi-Chr11:1770665 6.63E-34 dispersed
Lsi05g00086 Lsi-Chr5:1579443 Lsi09g00028 Lsi-Chr9:272284 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g882 . Blo15g00090 . . . Bpe07g01011 . . . Cmo18g01338 Cma02g01110 . . . Sed05g0421 Cpe05g00606 . Bhi01g01471 Tan01g0127 Cmetu09g1394 Lac11g0146 Hepe07g0078 Mch10g0078 . Cla01g00051 Cam01g0048 Cec01g0048 Cco01g0050 Clacu01g0051 Cmu01g0048 Cre09g2459 Cone1ag0965 . Cone14ag0022 Cone15ag0025 . Csa05g00058 Chy09g01431 Cme06g01114 . . Bda06g00781 . . . . Bma12g01194 . Cmo02g01138 . . Cma18g01308 . Car18g01222 Cpe09g00034 . Bhi12g00627 . . . . . Lcy12g0124 Cla05g00957 Cam05g1048 Cec05g1053 Cco05g1047 Clacu05g1041 Cmu05g0991 Cre05g1068 Lsi09g00028 . Chy06g01236 Cme09g01974
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002366 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 2 2 5 5 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00028 Lsi_Chr09 FPKM 11.05821 13.748487 6.495493 6.069795 8.113666 5.837774 6.953697 7.678626 8.106605 8.759213