Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00029 ATGAGAATTGGTTTTCATACCTCTATTTGCATAATTTGGACCGCTGTGGATAACCGGTTGAGAACCTTTGGATGTTGGGGGTGGGGGTTACAGGAGTTCCCTCAAGAAACTTGTGTCAACTTTAGAAATTGGACTATAATTATCATGACTTATCTTCAGAAGAAGATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGATAACACTTTAAATGCTGGAAAGATTGGGACAAGAGCTGACTTAGTATCAGAGAAGCCTCACAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATCAAGAAATCCTTGAAATCATCTTCTTTCAATAAATTCATGTCCAGAGGTCTTGGAACTGGAAAAAAAGTGCTTGACCCACAGGGACCCTTTCTGCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCATTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGACGATAAGAAATGTCTTGGGTTGGATAAGAAGATGGAGATTACAGCTAGTGTGTTACGTTCATTCACCGACATATTTTATATATTACATATTGTTTTTCAATTTCGCACGGGATTTATCGCCCCTTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAGAGATATCTTTCATCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATAGTTATTCCAAACATGAAGGGCTCAAGGTCGTTGAATACCAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAGTATGTGCCACGGTTTATTAGAATCTATCCATTATATAGAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGGGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGAGCATTCTGGTACTTGTTTTCTATAGAACGAGAAACTACATGCTGGCGAAGGGCTTGTGATAATAGTACTGCTTGTGTTCATTCACTATATTGTGATGTCAGTCCAGGGAACAACTCATTTTTAAATATTAAATGTCCTCTTGATGATGGAGACAATCCTCTTTTTGATTTTGGAATATTTCTTGATGCTCTTAATTCTGGTGTTGTCGGATTTTTTTTGTGGTCAAATGTTATTCTCTTTGCTTCTTGGTTGGATGAAAGAATACATGTGATTCAAGGGATTGCTTGTGATGGATGGTGTAAGAAAATTTTGTGCCCTCTATATGAAAGATCAACTCTTTTGCTAATTTTTCCACGAGATATGCTTGTATTAGTGGATAAAATTGAGAAGGGAGGAGATCCCCAACTAAAACTTGGAATTAAGCCTGTGTTGTTGAGATCATTCACTTTGAAAAGGAAAATCCCATTGGAGCGTGCAGTGGGCAACATATGCATGTTGTGGATTCCATCATTTGTAGTAACCTTATACAACCAAGATACTAGGTGGCGCTTGGTTCTGCTTAAGAATTTGAATAGAATCTATTTTGAGCAAGAGGAACTCAGTGGAGAATATCCTGACGATAAAGAAACCTGCCCATTCAAAAATATTGCTACCATTGAAACACCTTCCGAAATGCAAATTCCAACTGTCTGTGGTTCAATCTTTAGACTTGGATGCTTCTCTCTGCATGTGACTATCATTAAGCACCTTACGTCAAGGAAAAGCATTAGCCAAGTGGTAATTATTTGTCCACATATATTTCTAGAACCTCATACTCTCATCGAGCCCATTTTTAATGAAAGGAAACCAGAAAAGTGCTGCCTCATACTGCCACGGCATTTGACTTCTACTGCCTCCTCCGAGCAAGGACATTTTATTTTATTTTATTTTTTTTACTGGTGCATTTTGTTGTTTACTGTTGGAATTCACCTGATTAGAAGCATATTTCACTTGACATCTATTACAAGCTTTTTTATTTCCCTGGGTCAAAATCTCAAAACAAGCACTTACGTGTGGGAAATTTGCTTTGCTGTTTTCATCTCCATTTCTGGTTTAGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAGCAATGGATGTCCCACCGTTTGCTCCCTGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAACAGTACAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATCTGGTTCGAAATCTTCCAAAAGATCTCAGAAGGGATATTAAACGCCATCTCTGCTTGTCTTTGCTAATGAGGGTACCCATGTTTGAAAAAATGGACGAACAATTGCTGGATGCGATGTGTGACTGTCTCAAGCCAGTACTATACACGGAGGAAAGTTACATTGTGAGGGAAGGAGACCCGGTAGACGAGATGATTTTCATTATGCGAGGCAAGTTATTGTCTGTAACTACGAATGGGGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCGGGTGATTTCTGTGGTGAGGAGTTACTGACATGGGCTCTGGATCCACACTCCTCATCCAATCTGCCAATTTCGACGAGAACTGTTCGAACACTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCTGATGACTTGAAGTTCGTAGCCTCACAGTTCCGAAGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCACAGCAATGGAGGACATGGGCAGCATGTTTTATACAAGCAGCGTGGCGTCGATACCGCAGAAAGAAGCATGAACAGACTCTCTTGGAAGAAGAGAACAGGTTAAAAGATGCATTGGCCAAGACAGGTGGGAGTTCTCCTAGTTTAGGTGCCACCATCTATGCATCCAGATTTGCAGCTAACATCCTTAGAACGATTCGACGGACAAGCTCACGGAAGGCCAGGATTCCAGAGAGAATACCACCCATGTTGCTTCAGAAACCAGCAGAACCTGATTTTACCTCTGAAGAGAATAGTTGA 3027 40.5 MRIGFHTSICIIWTAVDNRLRTFGCWGWGLQEFPQETCVNFRNWTIIIMTYLQKKIVRFQDWSSDKTSRGLYSADNTLNAGKIGTRADLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSRGLGTGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDKKCLGLDKKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIVIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYREVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWRRACDNSTACVHSLYCDVSPGNNSFLNIKCPLDDGDNPLFDFGIFLDALNSGVVGFFLWSNVILFASWLDERIHVIQGIACDGWCKKILCPLYERSTLLLIFPRDMLVLVDKIEKGGDPQLKLGIKPVLLRSFTLKRKIPLERAVGNICMLWIPSFVVTLYNQDTRWRLVLLKNLNRIYFEQEELSGEYPDDKETCPFKNIATIETPSEMQIPTVCGSIFRLGCFSLHVTIIKHLTSRKSISQVVIICPHIFLEPHTLIEPIFNERKPEKCCLILPRHLTSTASSEQGHFILFYFFYWCILLFTVGIHLIRSIFHLTSITSFFISLGQNLKTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPMFEKMDEQLLDAMCDCLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 279115 287051 - Lsi09G000290.1 Lsi09g00029 669642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00029 1008 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 54 404 - -
Lsi09g00029 1008 SUPERFAMILY cAMP-binding domain-like 707 900 IPR018490 -
Lsi09g00029 1008 Coils Coil 930 950 - -
Lsi09g00029 1008 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 54 404 - -
Lsi09g00029 1008 SMART cnmp_10 778 909 IPR000595 -
Lsi09g00029 1008 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 659 1005 - -
Lsi09g00029 1008 CDD CAP_ED 778 909 IPR000595 -
Lsi09g00029 1008 Pfam Cyclic nucleotide-binding domain 798 889 IPR000595 -
Lsi09g00029 1008 Pfam Ion transport protein 142 360 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi09g00029 1008 Gene3D Helix hairpin bin 704 769 - -
Lsi09g00029 1008 SUPERFAMILY Voltage-gated potassium channels 133 700 - -
Lsi09g00029 1008 ProSiteProfiles cAMP/cGMP binding motif profile. 778 862 IPR000595 -
Lsi09g00029 1008 Gene3D Jelly Rolls 776 896 IPR014710 -
Lsi09g00029 1008 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 659 1005 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02117 Lsi-Chr5:28049235 Lsi09g00029 Lsi-Chr9:279115 7.03E-45 dispersed
Lsi09g00029 Lsi-Chr9:279115 Lsi11g00684 Lsi-Chr11:7207436 1.14E-79 dispersed
Lsi01g01343 Lsi-Chr1:11630738 Lsi09g00029 Lsi-Chr9:279115 1.65E-15 transposed
Lsi03g00155 Lsi-Chr3:2154484 Lsi09g00029 Lsi-Chr9:279115 1.58E-21 transposed
Lsi05g00683 Lsi-Chr5:9081344 Lsi09g00029 Lsi-Chr9:279115 6.16E-25 transposed
Lsi11g01395 Lsi-Chr11:22488055 Lsi09g00029 Lsi-Chr9:279115 4.83E-21 transposed
Lsi05g00083 Lsi-Chr5:1559095 Lsi09g00029 Lsi-Chr9:279115 8.82E-20 wgd
Lsi05g02115 Lsi-Chr5:28013702 Lsi09g00029 Lsi-Chr9:279115 2.22E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00029 K05391 - csv:101221781 691.419