Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00033 ATGGCGGTATGGTCTTTGGTAAGGAGGTTTGATCAACCACAAAGATACAAACCTTTTGTTAGCAGATGTGTTTTGAAGGGAAACCTTGAAATCGGGACTCTCAGAGAAGTTGATGTGAAGTCGGGGCTTCCTGCCACAACGAGTACAGAGAGATTGGAACTCCTTGATGATGATAGGCACATCCTTAGCATGAGGATTGTTGGCGGAGATCACAGACTAAAGAATTACTCTTCAATCATTTCCCTGCATCCAGAAATCATTGATGGAAGACCAGGGACTTTGGTAATTGAATCATTTGTGGTGGATGTGCCTGAAGGAAACACGAAGGATGAGACTTGCTACTTTGTGGAAGCCTTGATTAAATGCAATCTCAAGTCACTTGCTGATGTTTCTGAGCGGCTTGCAGTGCAAGATCGCACTGAGCCACTTGATAGGATCTGA 441 44.22 MAVWSLVRRFDQPQRYKPFVSRCVLKGNLEIGTLREVDVKSGLPATTSTERLELLDDDRHILSMRIVGGDHRLKNYSSIISLHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADVSERLAVQDRTEPLDRI 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 314057 316783 + Lsi09G000330.1 Lsi09g00033 669646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00033 146 SUPERFAMILY Bet v1-like 3 130 - -
Lsi09g00033 146 CDD PYR_PYL_RCAR_like 2 132 - -
Lsi09g00033 146 Pfam Polyketide cyclase / dehydrase and lipid transport 2 132 IPR019587 -
Lsi09g00033 146 Gene3D - 1 141 IPR023393 -
Lsi09g00033 146 PANTHER - 2 143 - -
Lsi09g00033 146 PANTHER ABSCISIC ACID RECEPTOR PYL3-LIKE 2 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00033 K14496 PYL; abscisic acid receptor PYR/PYL family - csv:101221554 287.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00033 Lsi-Chr9:314057 Lsi03g02244 Lsi-Chr3:33439363 1.83E-55 dispersed
Lsi05g00081 Lsi-Chr5:1531558 Lsi09g00033 Lsi-Chr9:314057 1.54E-85 wgd
Lsi05g02112 Lsi-Chr5:27983966 Lsi09g00033 Lsi-Chr9:314057 4.18E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g878 . . . . . . . . . . Cma02g01106 Cma15g01033 Car02g00916 Car15g00965 . . . . . . . . . . Cla01g00054 Cam01g0052 Cec01g0052 Cco01g0054 Clacu01g0054 Cmu01g0052 Cre09g2455 Cone1ag0961 Cone5ag0647 . . . . Chy09g01427 Cme06g01103 . . . . . . . . . Cmo02g01134 Cmo15g01095 . . . . . Cpe13g00309 . . . . . . . . . . . . . . Lsi09g00033 Csa03g02200 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000330 3 6 1 3 1 4 8 4 4 4 3 4 8 4 5 7 4 10 8 4 4 4 3 4 4 3 3 8 6 3 137
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00033 Lsi_Chr09 FPKM 10.367009 10.297798 8.890397 8.423403 19.336409 16.685371 18.022924 5.594763 5.319771 5.786343