Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00038 ATGTTGAGGGTGTCATCATCTTTTGGAACATGGAAGCACAATCGTTGGAAAGCTTGCCTGGAACTATTCCCGACTCTATGTAAAGGTTTACATACTGAAAACTCCAATGTTATTTCTACCAATATTTGTATAAGTCGTCATGTAAGAAATGGTCATCTTGATCTTGCTCGAACTCTGTTCAATGAAATGCCAGTAAGAAGTGTTGTCTCGTGGAATATCATGATTTCTGGATACTCCAAATTAGGAAAGTATAGTGAAGCTCTCAATCTGGCTTCAGGGATGCATTGCAATAATATAAAATTAAATGAGACGACCTTTTCTACTTTGTTGAGTATTTGTGCACATTCAGGGTGTACATCTGAGGGAAAACAATTTCATTGTTTGGTTTTGAAATCTGGGTTGCAGATATTTGAGCTTGTGGGCAGTGCATTGTTGTATATGTATGCAAACATCAATGACATTAGTGGAGCTAAGCAAGTCTTTGATGAGTTGCATGATAAGAATGATTTATTATGGAGCTTGATGCTTGTGGGGTATGTGAAATGCAATTTGATGGATGATGCTTTTGATCTATTTATGAAAATTCCAAAACGGGATGTGGTGGCGTGGACTACTTTGATATCAGGGTATGCAAGAAGTGAGCATAACTGCAAGAAGGCATTGGAATTATTCTGCTCGATGTGGATGAATGGTGAGGTTGAGCCTAATGAGTTCACTTTTGATTGTGTTTTGAGAGCTTGTGGGAGAATGAGAGATTTGAGTCAGGGGAAGGTTGTTCATGGGATTTTGACTAAATATGGATTCCACTTCGATCATTCAATTTGTAGTGCGCTGATTTTATTTTACTGTCAGTGTGAAGCTATTGACAATGCGAAGGCAGTTTATGATAGTATGGCAAGACCGTGTCTAAATGCTTCAAATTCTCTTCTAGAGGGGCTAATATTAGCAGGAAGAATTAATGATGCTGAAGAAATTTTTTATACGTTAAAAGAAAAAAATCCAATTTCATATAATTTGATGCTTAAAGGATATGCAATGAGTGGTAGAATTGAAGAATCAAAGAGATTATTTGAAAGAATGAGTCATAAAACTACCATTTCATTAAACACTATGATATCTGTGTATTCCAGGAATGGTGAAATTGATAAAGCTTTCAAATTATTTGAGTCAATGAAGAGTGAAGGAAACCCTGTGACATGGAACTCAATGATATCAGGCTATATTCAAAATCATCAGCATGAAGAAGCTTTGAAACTCTATCTAACCATGTGCAGAACATCCGTTGAACGCTCTAGATCAACATTCTCTGCTCTGTTTCAAGCATGCACATGCTTAGGATCTATTCAATTGGGTCAATCACTCCATGACCATGCAATCAAGACAGCCTTTGACTCCAATGTTTATGTTGGAACATCACTCATAGATATGTACTCAAAATGTGGGAGCATCTATGATGCTCAGACTTCGTTTGCCAGTGTTTATTTCCCTAATGTGGCAGCTTTTACCGCTCTAATTAATGGATATGTGCATCATGGACTTGGGATTCAAGCATTCTTTGTCTTTAAGGAGATGTTGAAGCACAAAGTTCTGCCAAATGGAGCTACTCTTTTGGGGATTCTTTCTGCATGTAGTTGTGCTGGTATGGTAAATGAAGGAATGACAGTTTTCCATTCAATGGAAAAATGTTATGGTGTGATTCCAACTTTAGAACACTATGCGTGTGTGGTGGATCTTCTTGGTCGGTCCGGACGTCTGTATGAAGCTGAAGAATTTATTAGAAGCATGCCAATTGAAGCTGATAGAGTTATTTGGGGAGCTCTGCTAAATGCTTGTTGGTTTTGGATGGACTTGGAATTGGGTGAGAGTGTGGCTAAGAAGATGCTTAGTTTGGACCCCAAAGCAATATCTGCTTATATTATTCTGTCTAATATATATGCTAAAGTAGGGAAGTGGGTCGAGAAGATCAATGTAAGGAGGCAATTAAGGAGCTTAAAAGTGAAAAAGAATCGTGGTTGTAGCTGGATCAATGTAAATAATAAAATTCATGTTTTCTCTGTAGAAGACAGGTCCCATCCTAACTGTAATGCGATTTATGCAACTTTAGAGCATCTATTAGCAAATGTGAACTCTATAGCTCAATTTAACTGTGTTCCCAAATCCGTTTCGAAGGTTCCTTGTCAGAATTCAATATACTCCCTTTGA 2202 37.56 MLRVSSSFGTWKHNRWKACLELFPTLCKGLHTENSNVISTNICISRHVRNGHLDLARTLFNEMPVRSVVSWNIMISGYSKLGKYSEALNLASGMHCNNIKLNETTFSTLLSICAHSGCTSEGKQFHCLVLKSGLQIFELVGSALLYMYANINDISGAKQVFDELHDKNDLLWSLMLVGYVKCNLMDDAFDLFMKIPKRDVVAWTTLISGYARSEHNCKKALELFCSMWMNGEVEPNEFTFDCVLRACGRMRDLSQGKVVHGILTKYGFHFDHSICSALILFYCQCEAIDNAKAVYDSMARPCLNASNSLLEGLILAGRINDAEEIFYTLKEKNPISYNLMLKGYAMSGRIEESKRLFERMSHKTTISLNTMISVYSRNGEIDKAFKLFESMKSEGNPVTWNSMISGYIQNHQHEEALKLYLTMCRTSVERSRSTFSALFQACTCLGSIQLGQSLHDHAIKTAFDSNVYVGTSLIDMYSKCGSIYDAQTSFASVYFPNVAAFTALINGYVHHGLGIQAFFVFKEMLKHKVLPNGATLLGILSACSCAGMVNEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEEFIRSMPIEADRVIWGALLNACWFWMDLELGESVAKKMLSLDPKAISAYIILSNIYAKVGKWVEKINVRRQLRSLKVKKNRGCSWINVNNKIHVFSVEDRSHPNCNAIYATLEHLLANVNSIAQFNCVPKSVSKVPCQNSIYSL 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 345868 348069 + Lsi09G000380.1 Lsi09g00038 669651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00038 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 363 IPR002885 -
Lsi09g00038 733 TIGRFAM PPR: pentatricopeptide repeat domain 69 103 IPR002885 -
Lsi09g00038 733 TIGRFAM PPR: pentatricopeptide repeat domain 40 67 IPR002885 -
Lsi09g00038 733 TIGRFAM PPR: pentatricopeptide repeat domain 398 429 IPR002885 -
Lsi09g00038 733 TIGRFAM PPR: pentatricopeptide repeat domain 335 361 IPR002885 -
Lsi09g00038 733 TIGRFAM PPR: pentatricopeptide repeat domain 539 568 IPR002885 -
Lsi09g00038 733 TIGRFAM PPR: pentatricopeptide repeat domain 500 532 IPR002885 -
Lsi09g00038 733 TIGRFAM PPR: pentatricopeptide repeat domain 367 395 IPR002885 -
Lsi09g00038 733 Pfam E motif 616 676 IPR046848 -
Lsi09g00038 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Lsi09g00038 733 Pfam PPR repeat family 67 114 IPR002885 -
Lsi09g00038 733 Pfam PPR repeat family 496 543 IPR002885 -
Lsi09g00038 733 Pfam PPR repeat family 198 247 IPR002885 -
Lsi09g00038 733 Pfam PPR repeat family 396 442 IPR002885 -
Lsi09g00038 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Lsi09g00038 733 Gene3D Tetratricopeptide repeat domain 9 127 IPR011990 GO:0005515
Lsi09g00038 733 Gene3D Tetratricopeptide repeat domain 258 363 IPR011990 GO:0005515
Lsi09g00038 733 Gene3D Tetratricopeptide repeat domain 128 257 IPR011990 GO:0005515
Lsi09g00038 733 Pfam PPR repeat 335 361 IPR002885 -
Lsi09g00038 733 Pfam PPR repeat 40 66 IPR002885 -
Lsi09g00038 733 Pfam PPR repeat 367 395 IPR002885 -
Lsi09g00038 733 Pfam PPR repeat 307 333 IPR002885 -
Lsi09g00038 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Lsi09g00038 733 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 197 688 - -
Lsi09g00038 733 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 125 - -
Lsi09g00038 733 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 120 311 - -
Lsi09g00038 733 Gene3D Tetratricopeptide repeat domain 364 462 IPR011990 GO:0005515
Lsi09g00038 733 Gene3D Tetratricopeptide repeat domain 515 690 IPR011990 GO:0005515
Lsi09g00038 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 234 IPR002885 -
Lsi09g00038 733 SUPERFAMILY TPR-like 46 460 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00038 - - - csv:101215850 1293.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00038 Lsi-Chr9:345868 Lsi01g01743 Lsi-Chr1:16241303 2.09E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00038 Lsi_Chr09 FPKM 4.164851 4.256095 12.779869 14.519413 5.296608 5.752254 5.946649 16.967457 15.312575 16.401152