Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00040 ATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTAATAGCAGGCAGAATTCCGGGGCGGAAACCAGAAGAGATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGA 249 42.97 MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG 82
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 362888 364358 + Lsi09G000400.1 Lsi09g00040 669653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00040 82 SUPERFAMILY Homeodomain-like 31 70 IPR009057 -
Lsi09g00040 82 Gene3D - 30 74 - -
Lsi09g00040 82 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 1 79 - -
Lsi09g00040 82 CDD SANT 29 68 IPR001005 -
Lsi09g00040 82 Pfam Myb-like DNA-binding domain 31 69 IPR001005 -
Lsi09g00040 82 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 79 - -
Lsi09g00040 82 SMART sant 26 74 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00040 K09422 MYBP; transcription factor MYB, plant - csv:101221077 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00040 Lsi-Chr9:362888 Lsi09g00182 Lsi-Chr9:1905518 2.59E-16 dispersed
Lsi09g00040 Lsi-Chr9:362888 Lsi11g01195 Lsi-Chr11:20433508 1.66E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g869 . . . . . . . . . . Cma02g01101 Cma15g01040 . . . Cpe05g00615 . . . . . . . . Cla01g00061 Cam01g0060 Cec01g0061 Cco01g0061 Clacu01g0061 Cmu01g0061 Cre09g2447 . . . . . Csa05g00069 Chy09g01421 . . . . . . . . . . Cmo02g01127 Cmo15g01100 . . . . . Cpe13g00305 Bhi12g00613 . . Lac11g0135 Hepe06g0771 . Lcy12g0115 . . . . . . . Lsi09g00040 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002016 4 2 0 1 4 2 2 1 2 1 2 2 2 1 1 2 2 6 2 1 1 1 2 0 2 2 2 3 2 3 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25850 PF00249 Myb_DNA-binding 3.10E-07 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00040 Lsi_Chr09 FPKM 8.230769 8.27765 9.758504 10.794484 4.757001 2.675829 8.914831 6.106815 5.133255 8.893431