Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00041 ATGTTCTTTTGTTCATTTGAGAAGCGAGTGTTTGATTGTTACAGGATGAACTCGTTGGCGGAGCGGATGTTGAAGTCGGTTCGAGGGCATGATTCTTGGATTGGCTCGGAGGAGGAAGCCCAGAGAATTCAGAGAGATGGGCGTGATTCTTCGATGTTGGTTGTGGAGAGTGATGGGGTGCGGCTTTCTGCTTCACCGTCTCATCCTTCGAATGATACTGCTTCTAATGAAAAATTGGGGTTTGGAGAACGCGCTTTCTCTGCTGCTGGTGCCGCTTTTTTTTCTGCAGTCATTGTGAATCCTCTTGATGTTGCCAAGACAAGGTTGCAAGCTCAAGCTGCAGGAGTTCCTTATTCGCATCCTCTTAGTGATTGGACCAGTCGTATGGCCTTTTTTGGACCAAACACGATGTTTGCAGATTTAAGGTGTTCTCCCTCATGTGCCCGTGCGGGTATTCATGGTACAGTAGCAATATGTCCTCCTGATTGCTTTCAGTACAAAGGGACGTTGGATGTCTTCTACAAAATCATTCGACAGGTTGGTCATTTTCCTCTCGCTATTCTTGACCGATGGGAAGGATTTGCGAGGTTGTGGAGAGGCACAAATGCTGGCCTAGCCCTTGCTGTTCCCACGGTGGGAATCTACTTACCTTGCTATGACATATTCCGTAACTGGTTAGAAGAGATCACTTCCCAGAATCTTCCTGGTGCTACTCCTTATGTTCCTTTATTCGCTGGGGCATTCGCACGTTCTTTGGCTTGTGCAACTTGTTATCCAATTGAGCTTGCTAGAACTCGCATGCAGGCATTTAAGGAGATGCGAATTGGTAAGAAGCCGCCTGGAGTCTGGCAGACTTTACTAGGTGTCGTCTCCAATGTTAAGAGCGCAACTAATGGTGAAACTGCCTCAAAAAGTTACCGTGCCCTATGGACTGGAATGGGGGCACAGCTTGCACGTGATGTTCCATTCTCAGCAATTTGTTGGTCAACCCTTGAACCAGTCAGAAGGAAACTCCTTGGATTGGTAGGTGACAACGCTAATGCAGCTAGTGTGTTTGGGGCCAACTTTTCTGCTGGTTTTGTTGCCGGAAGTCTTGCTGCTGCCGCTACATGTCCCCTGGATGTTGCAAAAACCCGACGACAGATAGAGAAGGATCCGGTGAGGGCACTTAGAATGACAACGAGGCAGACACTGATGGAGGTTTGGAGGGATGGTGGGATGAAAGGACTATTTGCAGGAGTTGGACCTCGTGTTGGCCGTGCAGGCCCATCAGTTGGGATTGTTGTATCATTTTATGAAGTTGTGAAGTATGTTCTTCATCACCAATATCCAACTTCAGCTTCATGA 1347 47.74 MFFCSFEKRVFDCYRMNSLAERMLKSVRGHDSWIGSEEEAQRIQRDGRDSSMLVVESDGVRLSASPSHPSNDTASNEKLGFGERAFSAAGAAFFSAVIVNPLDVAKTRLQAQAAGVPYSHPLSDWTSRMAFFGPNTMFADLRCSPSCARAGIHGTVAICPPDCFQYKGTLDVFYKIIRQVGHFPLAILDRWEGFARLWRGTNAGLALAVPTVGIYLPCYDIFRNWLEEITSQNLPGATPYVPLFAGAFARSLACATCYPIELARTRMQAFKEMRIGKKPPGVWQTLLGVVSNVKSATNGETASKSYRALWTGMGAQLARDVPFSAICWSTLEPVRRKLLGLVGDNANAASVFGANFSAGFVAGSLAAAATCPLDVAKTRRQIEKDPVRALRMTTRQTLMEVWRDGGMKGLFAGVGPRVGRAGPSVGIVVSFYEVVKYVLHHQYPTSAS 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 364863 371314 - Lsi09G000410.1 Lsi09g00041 669654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00041 448 ProSiteProfiles Solute carrier (Solcar) repeat profile. 237 337 IPR018108 -
Lsi09g00041 448 PANTHER BNACNNG35730D PROTEIN 72 446 - -
Lsi09g00041 448 PANTHER FI19922P1-RELATED 72 446 IPR045315 GO:1990542
Lsi09g00041 448 ProSiteProfiles Solute carrier (Solcar) repeat profile. 350 438 IPR018108 -
Lsi09g00041 448 Gene3D Mitochondrial carrier domain 60 185 IPR023395 -
Lsi09g00041 448 Gene3D Mitochondrial carrier domain 186 446 IPR023395 -
Lsi09g00041 448 ProSiteProfiles Solute carrier (Solcar) repeat profile. 79 225 IPR018108 -
Lsi09g00041 448 Pfam Mitochondrial carrier protein 79 227 IPR018108 -
Lsi09g00041 448 Pfam Mitochondrial carrier protein 352 440 IPR018108 -
Lsi09g00041 448 Pfam Mitochondrial carrier protein 240 338 IPR018108 -
Lsi09g00041 448 SUPERFAMILY Mitochondrial carrier 78 434 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00041 K15119 SLC25A39_40; solute carrier family 25, member 39/40 - csv:101220455 743.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02090 Lsi-Chr5:27733515 Lsi09g00041 Lsi-Chr9:364863 1.05E-112 dispersed
Lsi09g00041 Lsi-Chr9:364863 Lsi04g00916 Lsi-Chr4:9249857 2.11E-15 dispersed
Lsi09g00041 Lsi-Chr9:364863 Lsi01g01476 Lsi-Chr1:12824733 1.23E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g853 . . . . . . . . . . . Cma15g01041 . Car15g00971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00370 . . . . Cmo15g01101 . . . . . . Bhi12g00610 . . . . . . . . . . . . . Lsi09g00041 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003249 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 11 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00041 Lsi_Chr09 FPKM 29.407408 32.865253 25.409969 24.984821 20.81497 18.189396 17.173479 19.085388 20.200645 22.885817