Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00046 ATGAGCTTCAAAAGGGACCTCGAGCTTGTCGTCTTCGTTTTCTCTGCAGTCTTCTGTTTTGCAGTGACTTTTTATCCGGTCATGTCAGAGCCGATCAAGGACAAGGAAGCTTTGCTTAATTTTATCAATAAGATGGATCACTCACACTCGCTCAATTGGAAGAAGAGCTCTTCTTTGTGTAAAGAGTGGATGGGAGTTCAATGCAACAACGATGAATCCCAAGTTGTAGCTCTGCGATTGGCTGAAGTTGGCTTACACGGTTCGATCCCGATCAACACGCTTGGCCGACTATTGGGACTTGAAACTCTAAGCCTAGGATCAAATTACATATCAGGGCCTTTCCCTTCCGACTTCCAAAAACTGAGAAATCTCAACTCACTCTACTTGGAAAACAACAAGTTTTCTGGTCCATTGCCATTGGATTTCTCAGTATGGAAGAATCTCAACATCATTGATTTGTCCAACAATGCCTTCAATGGGAGCATCCCTCACTTGATTTCAAACACGACGCATTTAACAACATTAAACCTTGCCAATAACTCACTCTCTGGTGAGATTCCAGACCTCCACCTTCCTAATTTGCAGGAGTTGGATCTTTCAAACAACTATCTCACAGGGAATGTCCCTCAGTCTCTTCAAAGATTTCCAAGTCGGGCATTCTCCGGTAACAACCTCGTCCCCGAAAATGCCGTTGCTCCAGTTCGTCCTGGACAATCGCCCAATGCTCAACCATCAAAGAAAGGTACAACAACAATTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAATGGGGCTAGTTATAGCAGTCATTTTGATGGTTATGTGCTGCTCAAACAGAGGAGTAAAAAACAAGGCCTCGTCAAAACTGGACAAACAAGATCTGTTTGTAAAGAAAAGGGCATCTGAGACACAAAGTAACAATCTCAAGTTTTTTCAGAGTCAGAGCCTTGAGTTTGACTTGGAGGACTTGTTGAGGGCATCTTCTGAAGTGCTCGGGAAGGGGACGTCCGGGACGACGTATAAGGCGACTTTAGAAGACGGTAATGCTGTGGCAGTGAAGAGGTTGAAGGAAGTGAGTGTTTCAAAGAAAGAATTTGAGCAGCAAATGGATGTGTTAGGGAGCATTGAACATGAAAATGTGTGTGGTTTAAGAGCATATTATTATTCAAAGGATGAGAAACTCATGGTCTTTGACTTTTATCAACATGGAAGTGTCTCTGCAATGTTGCATGTTGCGAGAGAGAAAGGGCAGTCTCCTCTAGATTGGGAAACTCGACTCCGAATCGCCATTGGCGCCGCCAGAGGAATCGCTCGCATCCACTCAGAAAACTGCGGCAAACTCTTCGTCCATGGAAATATCAAGGCCTCAAACGTCTTCCTCAACTCCGACGGCTACGGTTGCGTCTCCGACGCCGGCGTCGCCGCTCTGATGAACCTCATGGTCCCGCCGGCCACCAGATCCGCTGGATACCGTGCTCCCGAACTCAAGGATTCTCGCAAAGCATCTCAAGCATCTGATACTTACAGCTTTGGTGTCGTGCTTCTCGAGCTCCTCACCGGAAAATTTCCACTGCATACGAAGGGCGGCAACGGCGGAGGCGGAAGCGGCGGCGATCAAATTATCCACCTAGTGCGGTGGGTGAACGCGGTGGTCCGAGAGGAGTGGACGGCGGAGGTGTTCGATGTGGAGCTTTTGAGGTATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAAATTGCGCTATCTTGTGTAGGAAGAGTTCCGGATGATCGACCGGCAATGGCGGATGTTGTGGCTCGTTTGGAGGGAGTTCGTCGGGTGAGCGACGTAGGAAACCTACCACCGCCGCTGCTGCCAGCGTTGGAACGTGGAGTGGAGGATTTGATCCAGATTCAGGTAATTGTGGGTGAGGGTGACAGTGGAGCTCCGTCGAGATCGAATTGA 1959 47.93 MSFKRDLELVVFVFSAVFCFAVTFYPVMSEPIKDKEALLNFINKMDHSHSLNWKKSSSLCKEWMGVQCNNDESQVVALRLAEVGLHGSIPINTLGRLLGLETLSLGSNYISGPFPSDFQKLRNLNSLYLENNKFSGPLPLDFSVWKNLNIIDLSNNAFNGSIPHLISNTTHLTTLNLANNSLSGEIPDLHLPNLQELDLSNNYLTGNVPQSLQRFPSRAFSGNNLVPENAVAPVRPGQSPNAQPSKKGTTTIGEAAILGIIIGGSAMGLVIAVILMVMCCSNRGVKNKASSKLDKQDLFVKKRASETQSNNLKFFQSQSLEFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVAVKRLKEVSVSKKEFEQQMDVLGSIEHENVCGLRAYYYSKDEKLMVFDFYQHGSVSAMLHVAREKGQSPLDWETRLRIAIGAARGIARIHSENCGKLFVHGNIKASNVFLNSDGYGCVSDAGVAALMNLMVPPATRSAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKGGNGGGGSGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPAMADVVARLEGVRRVSDVGNLPPPLLPALERGVEDLIQIQVIVGEGDSGAPSRSN 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 402193 404633 - Lsi09G000460.1 Lsi09g00046 669659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00046 652 ProSiteProfiles Protein kinase domain profile. 329 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00046 652 Gene3D Phosphorylase Kinase; domain 1 295 403 - -
Lsi09g00046 652 Gene3D Ribonuclease Inhibitor 33 142 IPR032675 -
Lsi09g00046 652 SUPERFAMILY L domain-like 47 215 - -
Lsi09g00046 652 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Lsi09g00046 652 Gene3D Ribonuclease Inhibitor 143 229 IPR032675 -
Lsi09g00046 652 Pfam Leucine rich repeat 89 134 IPR001611 GO:0005515
Lsi09g00046 652 PANTHER LRR RECEPTOR-LIKE KINASE 20 617 - -
Lsi09g00046 652 Pfam Protein kinase domain 332 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00046 652 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Lsi09g00046 652 PRINTS Leucine-rich repeat signature 172 185 - -
Lsi09g00046 652 PRINTS Leucine-rich repeat signature 191 204 - -
Lsi09g00046 652 Pfam Leucine Rich repeats (2 copies) 170 204 IPR025875 -
Lsi09g00046 652 ProSiteProfiles Leucine-rich repeat profile. 171 192 IPR001611 GO:0005515
Lsi09g00046 652 Gene3D Transferase(Phosphotransferase) domain 1 405 616 - -
Lsi09g00046 652 PANTHER OS05G0588300 PROTEIN 20 617 - -
Lsi09g00046 652 SUPERFAMILY Protein kinase-like (PK-like) 317 607 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00046 Lsi-Chr9:402193 Lsi09g00194 Lsi-Chr9:2018164 0 dispersed
Lsi05g01168 Lsi-Chr5:19611775 Lsi09g00046 Lsi-Chr9:402193 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83870 PF00069 Pkinase 3.40E-31 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00046 - - csv:101219980 1112.06