Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00051 ATGGAGCAAGACAGTGAAGAAGAGGTAAAGACGTTTCAGAGCTTAGGGATATGTGAGCAATTGGTGGAGGCATGCGAAAGTTTAGGCTGGAAAAATCCATCAAAGATTCAGGCGGAGGCTATTCCTCATGCCCTAGAAGGAAAGGATTTAATTGGACTTGCACAAACTGGTTCTGGAAAAACTGGAGCTTTTGCTCTTCCCATTTTGCAAGCCCTCTTGGAAGCTCCTCAAGCATTTTTTGCCTGTGTGCTCTCTCCCACAAGGGAGCTTGCAATTCAGATAGCTGAGCAGTTCGAAGCTTTAGGGTCTGGCATCGGTATTAAGTGTGCAGTGCTTGTTGGAGGAGTAGACATGGTGCAGCAAGCCATTAACCTGGCAAAACGGCCACATATTGTTGTTGGGACACCTGGACGCCTTGTGGACCATCTAACCAATACGAAGGGTTTTTCCCTGCGCACATTGAAGTATCTGGTCCTTGATGAGGCAGATAGGTTATTGAATGAAGACTTCGAAAAATCAATAGATGAAATTCTGAATGAAATTCCTCGTGAGAGGAGAACATACCTATTTTCTGCTACTATGACTAAAAAGGTTCGGAAACTTCAAAGGGCATGCTTAAGGAATCCTGTTAAGATTGAAGCGGCAAGCAAATATTCCACAGTAGACACACTGAAGCAGCAATATTGTTTTATCCCTGCGAAGTATAAGGAGTGTTATCTTGTCTATATCTTAACTGAGATGTCTGGTTCAACATCAATGGTCTTCACCCGCACTTGTGACGCCACTCGCCTTCTATCATTGATTCTTCGAAATCTTGGATTAAGAGCCATGCCCATAAGTGGTCAGATGACCCAGGCAAAAAGACTAGGAGCCTTAAATAAGTTCAAGGCTGGAGAGTGCAATGTTCTCATCTGCACTGATGTGGCTAGCAGAGGACTTGATATTCCATCTGTGGATATGGTCATAAATTATGATATTCCTTCAAATTCCAAGGATTACATACATAGAGTTGGAAGAACTGCTCGTGCAGGTCGTTCTGGGGTTGCCATTTCCTTGGTTAATCAGTATGAGTTAGAGTGGTATATACAGATAGAGAAGCTCATAGGAAAAAAATTACCGCAGTTTTCCGCCCAAGAGGAGGAAGTTTTGATGCTTTTAGAGCGTGTGACAGAGGCAAAGAGAATATCTCTCATGAAAATTAAAGAAACTGGTGGTAAAAAAAGGAGGCGAGGTGGAGATGACGATGATGACAACGACAATAACGATGTTGAGAAGTATCTGCGTCTCAAGACCGGAAAGACTGGGAAAATGTCCAAGAATGGAAAAATGTCCAAGAAGTTGAAAAGAAAATGA 1353 42.79 MEQDSEEEVKTFQSLGICEQLVEACESLGWKNPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEAPQAFFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPHIVVGTPGRLVDHLTNTKGFSLRTLKYLVLDEADRLLNEDFEKSIDEILNEIPRERRTYLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYCFIPAKYKECYLVYILTEMSGSTSMVFTRTCDATRLLSLILRNLGLRAMPISGQMTQAKRLGALNKFKAGECNVLICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVLMLLERVTEAKRISLMKIKETGGKKRRRGGDDDDDNDNNDVEKYLRLKTGKTGKMSKNGKMSKKLKRK 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 428363 436432 + Lsi09G000510.1 Lsi09g00051 669664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00051 450 Gene3D - 1 215 IPR027417 -
Lsi09g00051 450 SMART helicmild6 263 344 IPR001650 -
Lsi09g00051 450 MobiDBLite consensus disorder prediction 403 450 - -
Lsi09g00051 450 PANTHER RNA HELICASE 5 422 - -
Lsi09g00051 450 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 212 IPR014001 -
Lsi09g00051 450 PANTHER BNAC02G41920D PROTEIN 5 422 - -
Lsi09g00051 450 Pfam Helicase conserved C-terminal domain 239 344 IPR001650 -
Lsi09g00051 450 SMART ultradead3 29 227 IPR014001 -
Lsi09g00051 450 Pfam DEAD/DEAH box helicase 35 201 IPR011545 GO:0003676|GO:0005524
Lsi09g00051 450 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Lsi09g00051 450 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 383 IPR001650 -
Lsi09g00051 450 Gene3D - 218 390 IPR027417 -
Lsi09g00051 450 CDD SF2_C_DEAD 224 353 - -
Lsi09g00051 450 CDD DEADc_DDX47 11 213 IPR044765 GO:0005524
Lsi09g00051 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 365 IPR027417 -
Lsi09g00051 450 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Lsi09g00051 450 MobiDBLite consensus disorder prediction 403 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00051 K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3 [EC:3.6.4.13] - csv:101219259 791.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00125 Lsi-Chr1:1306649 Lsi09g00051 Lsi-Chr9:428363 4.51E-35 dispersed
Lsi02g01929 Lsi-Chr2:25221691 Lsi09g00051 Lsi-Chr9:428363 2.71E-63 dispersed
Lsi07g01386 Lsi-Chr7:20133201 Lsi09g00051 Lsi-Chr9:428363 3.35E-48 dispersed
Lsi08g01201 Lsi-Chr8:20561158 Lsi09g00051 Lsi-Chr9:428363 9.61E-53 dispersed
Lsi09g00051 Lsi-Chr9:428363 Lsi10g01516 Lsi-Chr10:19433307 5.16E-121 dispersed
Lsi09g00286 Lsi-Chr9:2985071 Lsi09g00051 Lsi-Chr9:428363 3.07E-38 dispersed
Lsi09g01183 Lsi-Chr9:19105902 Lsi09g00051 Lsi-Chr9:428363 1.03E-60 dispersed
Lsi09g00051 Lsi-Chr9:428363 Lsi05g00831 Lsi-Chr5:13457425 2.67E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g348 . . . . . . . . Cmo06g01115 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00080 Chy09g01411 . . . . . . . . . . . . Cma06g01089 . Car06g00924 . Cpe08g00529 . . . . . . . . Cla01g00071 Cam01g0070 Cec01g0071 Cco01g0071 Clacu01g0071 Cmu01g0072 Cre09g2437 Lsi09g00051 . . Cme09g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005266 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00051 Lsi_Chr09 FPKM 10.469775 10.996026 5.296425 3.78875 8.038133 8.86267 8.684775 1.873616 1.950616 1.825928