Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00055 TTATTTCTTTTCCCTTCTAAGCATGGCCCTTACAAGCTCCCACCAGGTCCATCCACATTCCCTATTCTCACTAACTTCCTATGGCTCCGCCAATCTCCTCTTGAGCTTGAATCTTTGTTGCGTAGTTTCATTGCAAAATATGGGCCAATCCTCACCGTCCACGTCGGCCCGTCCCCCGCCATCATCATCGCCGATCGCTTCATCGCCCACAAGGCCCTCGTCCAAAATGGCGCCATTTTCGCCGACCGCCCCCAAGCCCTCTCCGTTAATAGGATCACGGCTTCTTCCAACCTCGACAACATCACCTCTGCTCCATACGGCCCCACTTGGCGCCTTCTCCGGCGCAACCTCGCGGCGGAGATGCTCCACCCTTCGCGGGTCAGGGCTTATTCTCGGGCACGCAAATGGGTTCTAGACGTCCTCGTTGCTCGCCTTTTGGCTCGGTCGGGATCCAAGGGCGGGGAATCAGTTGTTGTTGAGCATTTTCAGTTTGCTATGTTTTGTTTGTTGGTTTTGATGTGCTTTGGAGACAAGTTGAATGAGACACAAATCTTGGAGATTCAACAAGTGCAGCGTGAGATTCTTGTAAATCTTCAACGCTTTGTTATACTTAATTTGTGGCCTAAGTTGATGAAGATTTTGCTAAGAAAGCGCTGGAAGGAATATTTACAACTCAAGAGCAAACAACAAAAGGTCCTAATTCCATTTATCAAGGCACGAGAGAAGGTCAAAGAAGAAAGAGCAAAAAAAGAAGGAGAAGAAAAGGAAGAATTTGTGGTATCATATGTTGATACGTTGCTCGATTTGCAGCTCATCGACGAGAAAAGAAAGCTTAGGAACGAAGAAATGGTGAACTTATGTTCGGAGTTTCTCAATGCCGGGACTGACACTACCGCCACGACATTGCAATGGATCATGGCAAACTTAGTGAAGTACCCACAAATTCAACAAAAACTATTCGAAGAGATCAAAGGAGTTAAGAAATCACGGGAGGAGGAGGTGAAGGAAGAAGATTTAAGGAAGCTTCCATATTTGAAAGCTGTGATTCTAGAAGGATTAAGAAGACACCCACCAGGGCATTTCATGTTACCACATGCAGTGAAAGAAGATACAACGTTAGAGAATTACTTCATACCCAAGAACGGAATTGTGAATATCTATGCTGTGGAGATGGGGTGGGATCCACAAGTATGGGACGATCCGATGGCGTTTAAGCCGGAGCGGTTCATGAGCGACAACGGAGGGGAGGTGGTGTCGACGACGTTCGATATAACGGGGAGCAAGGAGATTAAGATGATGCCATTTGGAGCAGGGAGAAGGATTTGTCCAGGGGCAGCTTTGGCAATGCTTCATTTGGAATATTTTGTGGCAAATTTGGTTTGGAAATTTGAATGGAAGGCTGTGGAAGGAGAAGAAATTGATTTATCAGAGAAGATGGAATTTACTATTGTGATGAAGAATCCTCTCAAAGCCCATATTCATCCAAGGTTTTAG 1494 46.05 LFLFPSKHGPYKLPPGPSTFPILTNFLWLRQSPLELESLLRSFIAKYGPILTVHVGPSPAIIIADRFIAHKALVQNGAIFADRPQALSVNRITASSNLDNITSAPYGPTWRLLRRNLAAEMLHPSRVRAYSRARKWVLDVLVARLLARSGSKGGESVVVEHFQFAMFCLLVLMCFGDKLNETQILEIQQVQREILVNLQRFVILNLWPKLMKILLRKRWKEYLQLKSKQQKVLIPFIKAREKVKEERAKKEGEEKEEFVVSYVDTLLDLQLIDEKRKLRNEEMVNLCSEFLNAGTDTTATTLQWIMANLVKYPQIQQKLFEEIKGVKKSREEEVKEEDLRKLPYLKAVILEGLRRHPPGHFMLPHAVKEDTTLENYFIPKNGIVNIYAVEMGWDPQVWDDPMAFKPERFMSDNGGEVVSTTFDITGSKEIKMMPFGAGRRICPGAALAMLHLEYFVANLVWKFEWKAVEGEEIDLSEKMEFTIVMKNPLKAHIHPRF 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 458086 459907 + Lsi09G000550.1 Lsi09g00055 669668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00055 497 Coils Coil 236 256 - -
Lsi09g00055 497 Pfam Cytochrome P450 14 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PANTHER CYTOCHROME P450 7 494 - -
Lsi09g00055 497 PRINTS E-class P450 group I signature 44 63 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS E-class P450 group I signature 68 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS E-class P450 group I signature 346 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS E-class P450 group I signature 442 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS E-class P450 group I signature 282 299 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS E-class P450 group I signature 302 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS E-class P450 group I signature 432 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS P450 superfamily signature 293 310 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PRINTS P450 superfamily signature 442 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 7 494 - -
Lsi09g00055 497 SUPERFAMILY Cytochrome P450 14 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00055 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 435 444 IPR017972 GO:0005506|GO:0016705
Lsi09g00055 497 Gene3D Cytochrome P450 7 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00055 Lsi-Chr9:458086 Lsi10g00252 Lsi-Chr10:4108716 3.59E-113 dispersed
Lsi09g00055 Lsi-Chr9:458086 Lsi08g00659 Lsi-Chr8:14933121 2.34E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00055 K24184 - csv:101218555 810.061