Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00056 ATGCATGATTGTATTGCCAACTATCTGGCGGAAAAGTCTCATTTCGTGGTTTTCTTTAATCCTTCAGTGAAGATTTTGGTGTTCCTCACAATGCCTATTGAACCCACGTCAAGTGACATTGCACAACAGATCGAATATTTATGGGGTTTGAATGGAACATTCTCAGAAGATGACTGGAAATTGGTGCAGCTGGTTATAACACTCTTCCGAAATGTTTTGGCTATTCAAGAAATCTCATTGCAGCAAAAGGCTGATGGATCAGCTTGTCAGTTAATATTGCTGAGAGACAAGTTTCTGGAAGTCTTATTCCGAGAGAATGTTATGGACATAATATTGGTGATGACGCAACACATTGATGGTTCTTGCAGCCTTCTCCGTCAAGACAAATTAGTCTTTATGGAAATATTTTATTACATATTTATGGGCCAAGAGCCAGAGTTAATTGCGAAAGTACCTCAAAACAGCAGCAAGGAAAATGTAGAAGCGGTATCTTCTGTCAATAGTCTGAAGTCTATGATGGAGGAAGATAGAAGAAAGTCTTCTAGATTACACAATATGAACCGCCATTCTCAGTTTAGTGGAACTTTTACTCGGCATACCTTGGATGGTTCAAAGTTAGTACTCAAAGGAAAACCATCTTTGACTTCTTGTACCAGCCTTAAACCACCTAAAGCTTGTCGAGGTCCAATTAAAAAAATTGCATGGGACCATGGACGATTAACTTCGAAAAACAGCAAACTTCTGCAGTTACTTCATGATTTTATCAACCAGTTTCTTTCAGGCGGCTACAATGGTTTGTCTCAAGAATTTCTCTTGTTACTTTCTTCTTTACGTGGTCTTGTAGACATACGTTTCACCAAGATGCAGAATCCTAATTACTCCATTGCTCTGATGCAGTTGTTGCATGAAGATATTGAAAAGGAACATCATTCCATCCAGAACAACGATGTGGTTGTTTTTTTTCAGGTTGCACAATTTGCTATTTCTTTTCAGTATCACAAGTTCTCAACTTCAAAGAAAAGGTCACTTGTGAAGGTTTACATGTATCACAGCCTTAGCATTATTATTTATTTGGATTTTTTAATAATGCTGGACTCAACATGTTGTTTTGTGAAATTTTTAATAATTTTATGTAGTTCTTTCTTCCTAATCCTGTTTGAGTTATTCTTCTTAGGGATAATTGAAGCTGATACTGGCGAGGCTCAAACGGAACATGCTGATTCCACATTTTTCCAAGGTAACATGTGCGGGCCAATAGCAGCAACAATGAACGAGGCAATGTTTCAGCTAGTTGTTACAAAATGGCGTTATGCATTTGAAGGCTTAAAGGAAACTAGTGACTTTAAGTTTCTGTCTGCAGCTGGCTCTCTGATGAAAAATATGAAATATTTTTACGATTGGGCAGTGTTCAAGTCTCAGAAATTTTCTGATCTAGAGATTTGCATGCTAGATTTGGTGCTAAAATTATTGCCAGAAGATTCAAAGGAACCTCAAACAGCTCGTATTCTACTTTACAAATTATTTTATGATCAGACAGATCAAGGGATGACTCAATTCCTCTTAAATTTGCTCAAGTCATTCAACACTCACAAACAACCTAAAAGTGATCTTGCAGATTTAGTTGAGATGATCTACAAAGTCGTACAGCTTATGGAGAACCTCCAAGCACGTGGAACACTTCGGGTTTCCAAAAAATCAAGGAGGGGAAAAAAGGCAAAGTCAGCAAATAATAAGGATAACAAACAGTCAGAAGATCAGGGAGCTGAGAATAAGATGGGCATAACCCACAATGAGCAATCAACAGATGTCGATGTTGATGAAAATGGCAAGTTAAAAACAAGTCCTGATGGTAAAGAAGAGATCTCTATTACTGCTAAGGCCGGCGAATCTGAACTGCTAGACCTAAACACGGGAAGTTTTGAAGGCAGTCTGTCACAGAGAGAGAACAAAAAATTGAATGATGGTTATAGCACAGCCGACTCTTCTAGTGATGAACAGCAAAATAGAATTGTGGAGGTTGATCTTAAAGTATCAAGTCTAGTATCTACTTTTGCCAACAACAACATTATTCAGAAAATATGCTGGTTGCTTAAGTTTTACAAAAGCAATGCTACTAATACAAACCATTACATAATATGCATTTTACGGAGGATCACTGAGGATTTAGAGCTTTCTCCAATGCTGTACCAGTTATCTGTCCTTCCCACATTTTATGATATTCTATCTGAACAGAAGTCAAGTCCATGCAAGGAACATGCTACTATAGTTGATTTCCTGACAAGTCTGGTGAGAAAGATGCTAAGGAAGATAAAGAATCAGCCACTCCTTTTTGTTGAAATTCTGTTTTGGAAGACCCGAAAAGAATGCCATTACATTGATGCTGAGTACTTAGTGCACGAGCTTGGCTGTTGGAAGAAAGAAAGTAGGGAGGAAAATTTTATCGGTGGTGATGAAAATGGCTCATTGACAGGCAAGCATTGGACTCCTAGAAGCATAGCGGATGCACTTGGTGAAGATGAAGCTGATGTTGTGATCACCTCTAACGAGGTTGGATTTCATAGTTTACGAGAGTTTTCACAAGTTATTAATGATAGAAGATTTTTTTTTAATGGTAATACTGCAAAAGAATTCTGTGATAGCAAATGTCTTATTGAAAGCTTTTATGTGATAGAAAAGATCACCTTTTTCATACTTGACAGTGAAGCAAAGTCTGACGAAGTCAAGAGAGGCCTTGAGTCTACCACCTTGGATGATGAGATAGACGGGAAAGAACACAATGAAAGTGAGCTGTCTATGGATGATAAATCCAAAAGGCTTCCTAAAAGAAAGAGATTTGTTCTTGATGCTGCACTGGATACTAAAATTAAAGATCTTTATGAGAAATTCAAGGAGGACAGGAACTGTAGCAAACTTATTGCGGAGAATCTTGATAATGATGTCAAAGTTTCGCCTGCCCAGGTTTCCAATAAGCTTAGACAAATGGGTTTGAAAGTTTCTCAGAGAAAGAAGAGGCAGTATGCTGATGAAGCCTTTTCTGCTAGTTTTGAAAACCTTGAAGCAGAAAGCAATGAGGAAGAAAGAAATAGTCTACTCAACTCAAATGTTTTTGGGAAAAGTTCATTGAATCAACCTTCGCTCACTAGAAAAAGAGTTCTTGCTTTTGATAAAGAACACGAAGAGAAGATTAGAGCTTTATATGAGCAGTTTAAAGACCATAAGAGATGTAGTTCTATGATTGCAAATGCGCTGGATGCTGACAACAAATTCACTCCTGCCCAAGTTTCCCGAAAGCTCAAACAGTTGGGTTTGTATATTTCTGGCAAGAGAAGGTCAAGTGATGGGGATCACAATAATTCTGCTATTGATAAGGAATCTGAAAGTGATGATGAAACATTGCTCTCATTAATAAATAGACTGTTAAGAGAGAAATTCAGGCATCATTTCACAATACTGTGTCATCGCCATCTTCTAAATTTATTCCCTTTCTCTCTCATCATTTCCTTTTTTATCTTCTCCCTCTATTTTGGTTCTCATTATTATGGTATCCTAGCCATAGCATTATCTAGGATGAAAAAAGGGAAGCATCTTCCAAAGTCAACTGAAGCGCCCAGTTCCATCTCAACACAGAGCATATTAGTTGATGAGGAATCTGAAGGTATAGCTGTTGGAAGGTCCATGCAAATAGAGGATAAGGACCGAGCCAATAGCTTGGAACCTATGGGGGTTGGTGAAGCGCCTTCAGATGATGTTGACTTGAATGACTTTACGGAAAGTCAAGGTAAGGATGCTGAAGCTGGCGTCAGTATGGATGATTTGATGCAAAAGGCCATGGAAGATGAGTTTGTAGATTCAGATAATGAAGTGGCTCCCAGTGTGTATCGTGCAAGTGCCACAGCTAGAAGAAAGTTTAGGATTGTTGATCTTGAGGATGAAGAATGA 3939 38.18 MHDCIANYLAEKSHFVVFFNPSVKILVFLTMPIEPTSSDIAQQIEYLWGLNGTFSEDDWKLVQLVITLFRNVLAIQEISLQQKADGSACQLILLRDKFLEVLFRENVMDIILVMTQHIDGSCSLLRQDKLVFMEIFYYIFMGQEPELIAKVPQNSSKENVEAVSSVNSLKSMMEEDRRKSSRLHNMNRHSQFSGTFTRHTLDGSKLVLKGKPSLTSCTSLKPPKACRGPIKKIAWDHGRLTSKNSKLLQLLHDFINQFLSGGYNGLSQEFLLLLSSLRGLVDIRFTKMQNPNYSIALMQLLHEDIEKEHHSIQNNDVVVFFQVAQFAISFQYHKFSTSKKRSLVKVYMYHSLSIIIYLDFLIMLDSTCCFVKFLIILCSSFFLILFELFFLGIIEADTGEAQTEHADSTFFQGNMCGPIAATMNEAMFQLVVTKWRYAFEGLKETSDFKFLSAAGSLMKNMKYFYDWAVFKSQKFSDLEICMLDLVLKLLPEDSKEPQTARILLYKLFYDQTDQGMTQFLLNLLKSFNTHKQPKSDLADLVEMIYKVVQLMENLQARGTLRVSKKSRRGKKAKSANNKDNKQSEDQGAENKMGITHNEQSTDVDVDENGKLKTSPDGKEEISITAKAGESELLDLNTGSFEGSLSQRENKKLNDGYSTADSSSDEQQNRIVEVDLKVSSLVSTFANNNIIQKICWLLKFYKSNATNTNHYIICILRRITEDLELSPMLYQLSVLPTFYDILSEQKSSPCKEHATIVDFLTSLVRKMLRKIKNQPLLFVEILFWKTRKECHYIDAEYLVHELGCWKKESREENFIGGDENGSLTGKHWTPRSIADALGEDEADVVITSNEVGFHSLREFSQVINDRRFFFNGNTAKEFCDSKCLIESFYVIEKITFFILDSEAKSDEVKRGLESTTLDDEIDGKEHNESELSMDDKSKRLPKRKRFVLDAALDTKIKDLYEKFKEDRNCSKLIAENLDNDVKVSPAQVSNKLRQMGLKVSQRKKRQYADEAFSASFENLEAESNEEERNSLLNSNVFGKSSLNQPSLTRKRVLAFDKEHEEKIRALYEQFKDHKRCSSMIANALDADNKFTPAQVSRKLKQLGLYISGKRRSSDGDHNNSAIDKESESDDETLLSLINRLLREKFRHHFTILCHRHLLNLFPFSLIISFFIFSLYFGSHYYGILAIALSRMKKGKHLPKSTEAPSSISTQSILVDEESEGIAVGRSMQIEDKDRANSLEPMGVGEAPSDDVDLNDFTESQGKDAEAGVSMDDLMQKAMEDEFVDSDNEVAPSVYRASATARRKFRIVDLEDEE 1312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 464476 473778 + Lsi09G000560.1 Lsi09g00056 669669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00056 1312 Pfam Timeless protein 54 197 IPR006906 -
Lsi09g00056 1312 PANTHER PROTEIN TIMELESS HOMOLOG 23 268 - -
Lsi09g00056 1312 PANTHER PROTEIN TIMELESS HOMOLOG 297 1264 - -
Lsi09g00056 1312 MobiDBLite consensus disorder prediction 600 621 - -
Lsi09g00056 1312 MobiDBLite consensus disorder prediction 1234 1270 - -
Lsi09g00056 1312 MobiDBLite consensus disorder prediction 559 621 - -
Lsi09g00056 1312 PANTHER TIMEOUT/TIMELESS-2 23 268 IPR044998 -
Lsi09g00056 1312 PANTHER TIMEOUT/TIMELESS-2 297 1264 IPR044998 -
Lsi09g00056 1312 MobiDBLite consensus disorder prediction 644 665 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00056 K03155 TIMELESS; timeless - csv:101218315 1805.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g830 . Blo15g00103 . . . Bpe07g01002 . . . . . . . . . . . . . . . . . . Cla01g00074 Cam01g0074 . Cco01g0075 Clacu01g0075 Cmu01g0076 Cre09g2433 . . . . . Csa05g00086 . . . . Bda06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00056 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011825 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00056 Lsi_Chr09 FPKM 0.0 0.0 3.447707 0.0 0.0 0.0 0.0 0.0 0.0 0.0