Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00066 ATGGAAAATGGAAAATATCAAGAACATAGATCCAAGGAGTTTGCTGAGGTTCCACCATTAATCAAACACATATCATCACTTCAAGTGGCTGGCTTTGACAGTATTGAAGAGAGTATTGAAGAGAGTGACCTTCCATATAATCAGTCTCAATCAAGTAGTTCTCATTCCCCCTCTACTCTGCCTAATGGAAATGCATCATCACCTGCTGCGCAAAGTGATATTGAACTTCAGTTTGTTAATCATCAAAGAAAGCATTCTGTTTCTATCAGCATGCCACCTTCCCCTGTGGCAGTTCACTTGACCCCCAAAAGAGTTCTCTTCAGTGGTGAAACAATTATAAACAATGGAACCTTGGGAAAATCAAAGAAAGATTCAATGTTTCACTCTCAGCCGATTCCGAGGGGCTCTACGTTTGAGGATGCAATGAGGAACATGAATGCTGCACATCACCCTAGTAGAAGATTGAAGGACAAAAGATATGATTCTTTCAAAACATGGTCTGGAAAACTTGAAAGACAATTGACTCTACTTCGTGGAAAGTCGCCACGACAAACTAATCCAGATGAAACTGAAGTTCAGGGAGCTGGAATTGAGAACAACATACCCGTTGACCGTTACTTTGCTGCATTGGAAGGTCCAGAGCTGGAAACGCTAAGGGCTTCAGAGGAAATACTGCTCCCAGATGACAGGACATGGCCTTTTTTACTCCGATTTCCTATCTCTTCGTTTGGTATCTGTCTTGGTGTTAGTAGCCAAGCAGTCATGTGGAAAACACTGGCCACTTCAATTTCCACAAAGTTCCTTCATTTGAGCCTGAAAATAAATCTCGTTTTATGGATAATTTCCATTGCTCTTGTAGTCACTGTTGCTTCCACCTACCTTCTGAAAATTCTTCTCTACTTTGAAGCCGTTCGCCGTGAATACTACCACCCTATTCGAGTCAACTTCTTCTTTGCACCGTGGATAGCCCTTTTGTTCTTAGCAATTGGTGTTCCTCCATCAGTTGCCACCAACCTGCCTCCGGCAATTTGGTATGTTCTCATGATTCCATTTCTATGCCTTGAGCTTAAGATTTATGGGCAATGGATGTCAGGAGGCCAACGAAGACTGTCAAAAGTGGCTAATCCTACAAACCATCTTTCCATTGTGGGGAACTTTGTGGGGGCTTTGTTGGGAGCTTCAATGGGATTAAAGGAAGGGCCGATTTTCTTCTTCGCAATCGGAATAGCTCACTATTTAGTCCTTTTTGTAACTCTCTACCAGAGATTACCAACCAATGAGACACTCCCAAAGGAGCTGCATCCTGTATTCTTTCTTTTCATAGCAGCACCAAGTGTTGCATCTATGGCATGGGGAAAAATTCAAGGCTCCTTTGACAATGCTTCAAGAATGATGTACTTTATTGCTATGTTCCTCTATTTCTCACTGGTTGTTAGAGTCAACTTTTTCCGGGGCTTCAAGTTCTCACTGGCCTGGTGGGCATATACTTTTCCTATGACTGGTGCTGCCATTGCAACTATAAAATACTCAGCTGAAGTTACAAATACATTTACACAAGTTCTGTCTGTTCTACTCTCTGTCACTGCTATAATCATAGTGGCATCTCTCCTTGTAACGACTATCATCCACGCCTTCGTTCTTCATGACCTCTTTCCTAATGACATCGCTATAGCCATTAGTGACAGGAAGCCAAAACCGAACTGGTTCCAACAACTAAGACAAGGAAGCTCAGAATCCCAAGATATCAAAAACTTCTTGAAGTTTTCGTGCTCAGATAGCAAGGATTTAGAAACATCGCTTAGACCAAAAACCTCTGAAGGCGAAGACGTGAACCTCCAACTGTCAAATGGTCAACTCCACTGA 1863 42.35 MENGKYQEHRSKEFAEVPPLIKHISSLQVAGFDSIEESIEESDLPYNQSQSSSSHSPSTLPNGNASSPAAQSDIELQFVNHQRKHSVSISMPPSPVAVHLTPKRVLFSGETIINNGTLGKSKKDSMFHSQPIPRGSTFEDAMRNMNAAHHPSRRLKDKRYDSFKTWSGKLERQLTLLRGKSPRQTNPDETEVQGAGIENNIPVDRYFAALEGPELETLRASEEILLPDDRTWPFLLRFPISSFGICLGVSSQAVMWKTLATSISTKFLHLSLKINLVLWIISIALVVTVASTYLLKILLYFEAVRREYYHPIRVNFFFAPWIALLFLAIGVPPSVATNLPPAIWYVLMIPFLCLELKIYGQWMSGGQRRLSKVANPTNHLSIVGNFVGALLGASMGLKEGPIFFFAIGIAHYLVLFVTLYQRLPTNETLPKELHPVFFLFIAAPSVASMAWGKIQGSFDNASRMMYFIAMFLYFSLVVRVNFFRGFKFSLAWWAYTFPMTGAAIATIKYSAEVTNTFTQVLSVLLSVTAIIIVASLLVTTIIHAFVLHDLFPNDIAIAISDRKPKPNWFQQLRQGSSESQDIKNFLKFSCSDSKDLETSLRPKTSEGEDVNLQLSNGQLH 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 551435 557626 - Lsi09G000660.1 Lsi09g00066 669679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00066 620 MobiDBLite consensus disorder prediction 599 620 - -
Lsi09g00066 620 MobiDBLite consensus disorder prediction 605 620 - -
Lsi09g00066 620 CDD TDT_SLAC1_like 237 540 - -
Lsi09g00066 620 Gene3D - 234 551 IPR038665 -
Lsi09g00066 620 PANTHER - 16 602 IPR030183 GO:0006873|GO:0008308|GO:0016021
Lsi09g00066 620 MobiDBLite consensus disorder prediction 38 68 - -
Lsi09g00066 620 PANTHER SLAC1-LIKE PROTEIN-RELATED 16 602 - -
Lsi09g00066 620 MobiDBLite consensus disorder prediction 41 68 - -
Lsi09g00066 620 Pfam Voltage-dependent anion channel 238 541 IPR004695 GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00066 - - - csv:101217604 1098.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01364 Lsi-Chr7:19837934 Lsi09g00066 Lsi-Chr9:551435 8.03E-144 dispersed
Lsi09g00066 Lsi-Chr9:551435 Lsi11g01441 Lsi-Chr11:22945198 3.54E-65 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g812 Blo06g01066 Blo15g00106 . Bda07g01912 Bpe03g00163 Bpe07g01000 Bma10g01268 . . . Cma02g01091 Cma15g01057 Car02g00832 Car15g00981 . Cpe05g00631 . . . . . . . . Cla01g00081 Cam01g0081 Cec01g0082 Cco01g0082 Clacu01g0081 Cmu01g0083 Cre09g2426 Cone1ag1202 Cone5ag0904 . Cone15ag0048 . Csa05g00094 Chy09g01400 . Blo07g00357 Blo09g00050 . . . Bpe12g00360 . Bma12g01185 . Cmo02g01110 Cmo15g01116 . . . . . Cpe13g00284 Bhi12g00763 . . Lac11g0088 Hepe06g0736 . Lcy12g0069 . . . . . . . Lsi09g00066 . . Cme09g01946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003004 1 1 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 2 1 1 1 1 5 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00066 Lsi_Chr09 FPKM 4.454595 4.657113 32.799751 33.126034 57.623013 58.499756 56.038399 40.147335 38.234646 36.505558