Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00068 ATGCCTGAAGGAAATAATGAAGGAAAAGACACTCTAAAGCTAGAGACTAATGCAGAATCATCGAAGGAAGCCCAAAGGGACGAAGCTGTTGGGGCAAAGACTGAATCCAAATCTGAAAATCCAGCTGCAGAAAACAGAAGTGAGGCAGAGAAATCTGTTCCTATAGTGAAAAAAGATGTTGAAAATGTGCCTCCACAAAAAGCACCTGAAATTCCTCCCGACAACGAATTTGAAAAGCGTATAAGACCCGAAGTTATCCCTGCAAATGAAATTGGGGTGACATTTGCAGACATTGGTGCTATGGATGATATCAAAGAGTCGTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTTTTTAAAGGTGGGCTTCTTAAACCTTGTAGGGGCATCCTGCTTTTTGGCCCTCCTGGAACGGGTAAAACAATGCTGGCAAAAGCCATTGCTAATGAAGCCGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGGGAAGATGAAAAGAATGTTCGTGCATTGTTTACGCTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGACGAAGTCGATAGCATGCTTGGCCAGAGGACTAGAGTGGGAGAGCATGAGGCCATGCGGAAGATTAAAAATGAATTCATGTCACACTGGGATGGACTGCTGACTAGGAATGATGAACGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGCAGAATTATGGTTGGTCTTCCATCAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAAAATTTGTGTGTGACTGCAGCTTACCGGCCTGTTCGGGAGCTCTTGCAACAAGAGAGATTGAAGGACTTGGAAAAGAAGCAGAGAGAGACAAAGGAAAAGGAGAAGCAGAAGCAGAAGGAGGAGGAGGAGGAGAAGGAAAAGGAAAAGGAGAAGCAGGAGGAGAAGGAGAAGGAGACGGAGACGGAGACGGAGACCGAGAACGAGAAGAAGGAGAAGGAAAATAATTCGGAAGAAGTTACAGGTACAAAAGAGGCAGAAAAAGAGGAACAAGTGATCATTCTGAGGCCTTTAAACATGGATGATATGAGGCAGGCCAAAAATCAGGTGAATATCTGTGTTTCCCTTAATTTTGAGATGCAAATAGACTTCATTTACCATGACTTCTTCGTGGCTCGTGTTGCTGCAAGTTTTGCTTCTGAGGGATCAGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAACTTACATACTTCTTATAG 1422 43.04 MPEGNNEGKDTLKLETNAESSKEAQRDEAVGAKTESKSENPAAENRSEAEKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFADIGAMDDIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQRETKEKEKQKQKEEEEEKEKEKEKQEEKEKETETETETENEKKEKENNSEEVTGTKEAEKEEQVIILRPLNMDDMRQAKNQVNICVSLNFEMQIDFIYHDFFVARVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 586185 588976 + Lsi09G000680.1 Lsi09g00068 669681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00068 473 MobiDBLite consensus disorder prediction 1 57 - -
Lsi09g00068 473 MobiDBLite consensus disorder prediction 330 391 - -
Lsi09g00068 473 Gene3D - 265 349 - -
Lsi09g00068 473 MobiDBLite consensus disorder prediction 1 74 - -
Lsi09g00068 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 336 IPR027417 -
Lsi09g00068 473 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 414 - -
Lsi09g00068 473 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 436 473 - -
Lsi09g00068 473 ProSitePatterns AAA-protein family signature. 236 255 IPR003960 GO:0005524|GO:0016887
Lsi09g00068 473 Gene3D - 92 350 IPR027417 -
Lsi09g00068 473 Coils Coil 324 393 - -
Lsi09g00068 473 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 3 414 - -
Lsi09g00068 473 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 436 473 - -
Lsi09g00068 473 SMART AAA_5 129 266 IPR003593 -
Lsi09g00068 473 CDD AAA 131 264 - -
Lsi09g00068 473 Pfam ATPase family associated with various cellular activities (AAA) 133 263 IPR003959 GO:0005524|GO:0016887
Lsi09g00068 473 Pfam AAA+ lid domain 285 328 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00068 - - - csv:101216426 716.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00458 Lsi-Chr1:3813702 Lsi09g00068 Lsi-Chr9:586185 1.32E-21 dispersed
Lsi07g00911 Lsi-Chr7:10593098 Lsi09g00068 Lsi-Chr9:586185 6.04E-19 dispersed
Lsi09g00068 Lsi-Chr9:586185 Lsi10g01158 Lsi-Chr10:15878348 8.70E-60 dispersed
Lsi09g00068 Lsi-Chr9:586185 Lsi05g00123 Lsi-Chr5:1904487 7.62E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00068 Lsi_Chr09 FPKM 176.578156 187.347595 125.13961 119.274597 107.321075 169.667191 106.813141 116.405151 102.495987 102.623062