Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00071 ATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGTTTTGCCTAAGCAAAAGAGAAATTCAGCAATTGTAGAATTTAAGAAAGCAATCGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAAGTCCCTCAAGACGTTCTCCTCCACATATTCCGCTTTCTAGATATTCAATCTTTAGTTTCAGCTGGGCTAGTCTGCCGGTCGTGGAATGTAGCAGCAGATGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGGTTGTTCTGATGACAACAGTAAACCCATTAATGATGAATACAGCGTGGATGACTTTACTAGCGCACCTCATGTTGATTGGAAAGAGGAATTCAAGAGAGCATATGTAGGTAATTCTTTGGGGAGAAACACATCTGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCCAATGATCATGGTAGAAATAAAAGTAAACAAATCAAGCCTTTGTCAATCAACCAGGTTGTTGAATATGTGTTAAATGGATCTTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGTTGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTGGGCAGTTGTCTCGTCTCCATCATTACTTATGTACACATTTTAAATGTCTTGCTCTCGTAA 723 40.11 MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDVLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDFTSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIKPLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSCLVSIITYVHILNVLLS 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 593810 598313 + Lsi09G000710.1 Lsi09g00071 669684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00071 240 PANTHER OS05G0526300 PROTEIN 1 221 - -
Lsi09g00071 240 SMART fbox_2 56 96 IPR001810 GO:0005515
Lsi09g00071 240 ProSiteProfiles F-box domain profile. 50 96 IPR001810 GO:0005515
Lsi09g00071 240 SUPERFAMILY F-box domain 55 136 IPR036047 GO:0005515
Lsi09g00071 240 Gene3D - 38 140 - -
Lsi09g00071 240 Pfam F-box-like 56 97 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00071 - - - cmo:103482926 397.512
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g807 Blo06g01140 . . . . . . . . . . Cma15g01060 . . . . . . . . . . . . Cla01g00084 Cam01g0085 Cec01g0084 Cco01g0085 Clacu01g0083 Cmu01g0085 Cre09g2424 . . Cone14ag0045 Cone15ag0050 . Csa05g00097 Chy09g01397 . . . . Bda15g00708 . Bpe12g00445 . . . . Cmo15g01118 . . . . . Cpe13g00282 Bhi12g00767 . . Lac11g0083 . . Lcy12g0065 . . . . . . . Lsi09g00071 . . Cme09g01943
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004262 1 2 1 1 1 1 1 1 1 1 3 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 2 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00071 Lsi_Chr09 FPKM 39.706421 47.926628 36.905777 44.212639 66.010353 68.430443 60.433838 84.645226 90.884453 81.706329