Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00073 ATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCGGTTCCGACAGCAACTGGAAACAATGTGCATATGATGTATATTTTCAATAGGAATGGAATTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGATCACAAACTTATGTTTGGTTTGCTCTTCTCGCTTAAATCCTTCACTGCCAAGATGGACCCAACCAGGTTTACGCTTCTTCCTTCACTGGGAAACCATTTTGGCTTATGGTGTGCTGCTGATAAAGGAAATCTTGGGGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACTAATTCCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATTTGAGGGACTCATTGAAGTACATCTACAACTTGTATGTCGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACCCCAATCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGAAGTATATTATAG 558 42.83 MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGICLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTRFTLLPSLGNHFGLWCAADKGNLGVPQLPGQGCSFHSFRTNSYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRSIL 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 616334 619116 - Lsi09G000730.1 Lsi09g00073 669686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00073 185 Pfam Sybindin-like family 23 183 IPR007233 GO:0016192|GO:0030008
Lsi09g00073 185 SUPERFAMILY SNARE-like 23 184 IPR011012 -
Lsi09g00073 185 Gene3D - 22 185 - -
Lsi09g00073 185 CDD TRAPPC1_MUM2 24 180 - -
Lsi09g00073 185 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 184 IPR007233 GO:0016192|GO:0030008
Lsi09g00073 185 PANTHER BNAC03G77750D PROTEIN 1 184 - -
Lsi09g00073 185 SMART Sybindin_2 23 184 IPR007233 GO:0016192|GO:0030008
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00073 K20300 TRAPPC1, BET5; trafficking protein particle complex subunit 1 - csv:101217138 338.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00073 Lsi-Chr9:616334 Lsi11g00653 Lsi-Chr11:6868980 1.53E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g795 Blo06g01138 Blo15g00178 . . . Bpe07g00925 . . . . Cma02g01086 Cma15g01063 Car02g00827 Car15g00984 . Cpe05g00635 . . . . . . . . Cla01g00086 Cam01g0087 Cec01g0087 Cco01g0088 Clacu01g0085 Cmu01g0087 Cre09g2421 . . . . . Csa05g00099 Chy09g01395 . . . Bda06g00696 . . . . Bma12g01108 . Cmo02g01104 Cmo15g01120 . . . . . Cpe13g00280 Bhi12g00771 . . . . . . . . . . . . . Lsi09g00073 . . Cme09g01940
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005077 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00073 Lsi_Chr09 FPKM 12.551802 13.181603 25.162922 25.923824 13.940208 14.776216 12.873115 7.611341 7.767854 8.674973