Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00076 ATGGCGGCCGGAAACGACGATTGGGATCTTTCCGCCGTCGTCCGGAGCTGCAATTCAGCAGCTTCCGCTACTGACCCAACTTCCGCCGCCGCCGAATCGGCCTTGTCTTGTCTCGCTTCTTTAACGTTCGAGGACGATCCAAACGACGTCGCATTCTCCTTTTCCGACATCCTTCAACCTAAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCATCTCCTTTCTCCCCAACAACCCCACCTCCGCCGTCTCCGCCGTACCCGCCGCCGTGCCGGAAATACCCAACTCGACCTCGAACCGCCATTTCCGACAAGGAATTAAACCCATTCGGCCGAACCCACATCCCATGGCGCTGCAGCAGCAGCACCACCACCGGCAACCACCGTTCCCGCCGGACTTCCCAAGTTCGCCAATGACGCAAACTCTCGTACCCAAATCGAGAAAAAGGCAAAACCAACAGAAGAGAACTGTATGCCATGTTACAGCAGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGCAGCTCAAAAGGGTGTGGAGCTAGAAAACAAGTTGAACGGAGCAACGCCGATCCCGAAACTTTCATCATCACATACACCGGAGATCATACTCATCCCCGTCCAACTCACCGGAATTCCCTCGCCGGAAGTTCCCGGAACAGGTCCTCCTCCTCCGTCCCCACGCGACACCCCGCCACGGGAGACCCCGATACCTCGCTCACCACCACCGCTCTCGTTGCCTCTTCCTCTTCCCCGGCAGCTTCTCCGATCACGCCGTTGGACGACGATGGTGGAGGCGGCGAAAAAGATGGAGAGATGTTCGATGATATGACCCTTGATAGTGATGACGATGACGACGATGACGATATTCTCATTCCGAACTTGACGGTGAGAGATGAAATCTATGTTGGCTTTGAGGAGCTTGGGCGGCAGCGGCCATTGTAA 990 54.95 MAAGNDDWDLSAVVRSCNSAASATDPTSAAAESALSCLASLTFEDDPNDVAFSFSDILQPKQPNGFHELHQAFISFLPNNPTSAVSAVPAAVPEIPNSTSNRHFRQGIKPIRPNPHPMALQQQHHHRQPPFPPDFPSSPMTQTLVPKSRKRQNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPSSSKGCGARKQVERSNADPETFIITYTGDHTHPRPTHRNSLAGSSRNRSSSSVPTRHPATGDPDTSLTTTALVASSSSPAASPITPLDDDGGGGEKDGEMFDDMTLDSDDDDDDDDILIPNLTVRDEIYVGFEELGRQRPL 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 633526 635293 - Lsi09G000760.1 Lsi09g00076 669689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00076 329 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 323 IPR044810 GO:0003700
Lsi09g00076 329 MobiDBLite consensus disorder prediction 180 306 - -
Lsi09g00076 329 SMART WRKY_cls 168 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi09g00076 329 Pfam WRKY DNA -binding domain 170 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi09g00076 329 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 6 323 - -
Lsi09g00076 329 ProSiteProfiles WRKY domain profile. 163 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi09g00076 329 SUPERFAMILY WRKY DNA-binding domain 163 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi09g00076 329 Gene3D WRKY domain 152 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi09g00076 329 MobiDBLite consensus disorder prediction 225 271 - -
Lsi09g00076 329 MobiDBLite consensus disorder prediction 290 305 - -
Lsi09g00076 329 MobiDBLite consensus disorder prediction 118 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00904 Lsi-Chr7:10405264 Lsi09g00076 Lsi-Chr9:633526 1.48E-32 dispersed
Lsi09g00076 Lsi-Chr9:633526 Lsi02g00829 Lsi-Chr2:7734065 1.55E-19 dispersed
Lsi05g02069 Lsi-Chr5:27610451 Lsi09g00076 Lsi-Chr9:633526 2.74E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25852 PF03106 WRKY 5.50E-16 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00076 K13425 - cmo:103482922 458.373