Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00076 | ATGGCGGCCGGAAACGACGATTGGGATCTTTCCGCCGTCGTCCGGAGCTGCAATTCAGCAGCTTCCGCTACTGACCCAACTTCCGCCGCCGCCGAATCGGCCTTGTCTTGTCTCGCTTCTTTAACGTTCGAGGACGATCCAAACGACGTCGCATTCTCCTTTTCCGACATCCTTCAACCTAAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCATCTCCTTTCTCCCCAACAACCCCACCTCCGCCGTCTCCGCCGTACCCGCCGCCGTGCCGGAAATACCCAACTCGACCTCGAACCGCCATTTCCGACAAGGAATTAAACCCATTCGGCCGAACCCACATCCCATGGCGCTGCAGCAGCAGCACCACCACCGGCAACCACCGTTCCCGCCGGACTTCCCAAGTTCGCCAATGACGCAAACTCTCGTACCCAAATCGAGAAAAAGGCAAAACCAACAGAAGAGAACTGTATGCCATGTTACAGCAGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGCAGCTCAAAAGGGTGTGGAGCTAGAAAACAAGTTGAACGGAGCAACGCCGATCCCGAAACTTTCATCATCACATACACCGGAGATCATACTCATCCCCGTCCAACTCACCGGAATTCCCTCGCCGGAAGTTCCCGGAACAGGTCCTCCTCCTCCGTCCCCACGCGACACCCCGCCACGGGAGACCCCGATACCTCGCTCACCACCACCGCTCTCGTTGCCTCTTCCTCTTCCCCGGCAGCTTCTCCGATCACGCCGTTGGACGACGATGGTGGAGGCGGCGAAAAAGATGGAGAGATGTTCGATGATATGACCCTTGATAGTGATGACGATGACGACGATGACGATATTCTCATTCCGAACTTGACGGTGAGAGATGAAATCTATGTTGGCTTTGAGGAGCTTGGGCGGCAGCGGCCATTGTAA | 990 | 54.95 | MAAGNDDWDLSAVVRSCNSAASATDPTSAAAESALSCLASLTFEDDPNDVAFSFSDILQPKQPNGFHELHQAFISFLPNNPTSAVSAVPAAVPEIPNSTSNRHFRQGIKPIRPNPHPMALQQQHHHRQPPFPPDFPSSPMTQTLVPKSRKRQNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPSSSKGCGARKQVERSNADPETFIITYTGDHTHPRPTHRNSLAGSSRNRSSSSVPTRHPATGDPDTSLTTTALVASSSSPAASPITPLDDDGGGGEKDGEMFDDMTLDSDDDDDDDDILIPNLTVRDEIYVGFEELGRQRPL | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 633526 | 635293 | - | Lsi09G000760.1 | Lsi09g00076 | 669689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00076 | 329 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 6 | 323 | IPR044810 | GO:0003700 | |
Lsi09g00076 | 329 | MobiDBLite | consensus disorder prediction | 180 | 306 | - | - | |
Lsi09g00076 | 329 | SMART | WRKY_cls | 168 | 222 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi09g00076 | 329 | Pfam | WRKY DNA -binding domain | 170 | 221 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi09g00076 | 329 | PANTHER | WRKY TRANSCRIPTION FACTOR 27-RELATED | 6 | 323 | - | - | |
Lsi09g00076 | 329 | ProSiteProfiles | WRKY domain profile. | 163 | 223 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi09g00076 | 329 | SUPERFAMILY | WRKY DNA-binding domain | 163 | 223 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi09g00076 | 329 | Gene3D | WRKY domain | 152 | 224 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi09g00076 | 329 | MobiDBLite | consensus disorder prediction | 225 | 271 | - | - | |
Lsi09g00076 | 329 | MobiDBLite | consensus disorder prediction | 290 | 305 | - | - | |
Lsi09g00076 | 329 | MobiDBLite | consensus disorder prediction | 118 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00904 | Lsi-Chr7:10405264 | Lsi09g00076 | Lsi-Chr9:633526 | 1.48E-32 | dispersed | |
Lsi09g00076 | Lsi-Chr9:633526 | Lsi02g00829 | Lsi-Chr2:7734065 | 1.55E-19 | dispersed | |
Lsi05g02069 | Lsi-Chr5:27610451 | Lsi09g00076 | Lsi-Chr9:633526 | 2.74E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25852 | PF03106 | WRKY | 5.50E-16 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00076 | K13425 | - | cmo:103482922 | 458.373 |