Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00077 ATGGCCTTTCAAATTGAACCTCCTAATGAACCCCATGAACAAAACCCACTTAAATTCATTACCCATTTCTTCCATTCTTCTACCTCCAATTTCTGTACCCTTTTCGCCAATCCCCAATCGATTCCCTCATTTTCTCTCCAATCCTCCTCTTCTAGGTTATGTTTTCCAGTCGCATTCCCAGCTTCCCGAAAACCCCTTTTTCTCTCCCATTCAGGTTTTTACTCAACTCATCATGACCTCGACTCCTCCAAATCTGCGGCTGTAAAGGGTTTGTCGTCATCGCCCGAGTTTAGCTCTGGTTTTCCGTCGACACTCAGGATTTCAGGCCTCAATTCCGATGGGAAAGCTGGCGGCCCAGCATTTGTTGGCCAGGTCTTCAGTATGTGCGACCTTTCTGGGACTGGTCTTATGGCCGTCTCCACTCATTTCGACATTCCTTTCATTTCTAAGAGAACCCCAGAGTGGCTTAAGAAGATGTTCTCAACCATTACTAAGAGTGAAAGAAATGGTCCCATATTCCGCTTCTTTACCGATTTAGGTGATGCAGCTACTGTGCATTACATTCTAACTCAAAATATTTGCTTCTTAGTTACATATGTTAAGCGACTGAATATTCCAAGTGCTGTGGTGGGGGCATGTCGTCTTGATTTAGCATATGAGCATTTCAAGGAAAAACCTCATCTATTTCAGTTCATTCCAAATGAGAAACAAGTTAAAGCAGCAAACAAGCTTCTTAAAGGCCTACCACAAAATGGTGGAAGCAAAAAGATTGATGGCGTTCCTGTGTTCAGTGCCCAAAACTTGGATATTGCAATAGCAACTACTGATGGGATAAAGTGGTACACTCCTTATTTTTTTGATAAAAACATGCTCGATAATATTCTTGAAGAATCTGTTGATCAGCATTTTCATGCTTTAATCCAAACTCGGCGTTTGCAGCGCCGAAGGGAGATAGTTGATGATAATGCAGCAGCAGAAGTTCAAGAAGTGATGGATGAGATGGGCAATCCTGGAATACCCTTGAGTGTCATCTCTAAGGTTGCTGAAATGCAGCTCCTTTATACCGTTGATAAAGTAATTCTCGGAAATAGATGGTTGCGTAAAGCTGTTGGTATTCAGCCCAAATTCCCTTACATGGTCGACTCATTTGAGAGAAGGAGTGCAGCTTCTCTCCTAAGAATCTCAGAGTCTGCTAGTAGTCTTACCAACTCTGAATCAATGAAGGAGACAAAAGAACTTCAATATCATAGTTCATCACCTCTCAACGTTCAAGATAATAGGGAAGCCATTCAAGAACCTAAGCAGCATTCCTTCAATCCTTTTAGAAATTGGTTTAGTCATCTGTGGTCAAAACAACGCCAAGGAGATGACTTTCCTCAGGAACGTACGAAACAAAATGCGCAGCCAAGTCCTTTTCTCCCCAAAATAACAATGGTAGGTATATCTACTGGTGACTCAGGGCACACAAGTAAAGCCAATTTAAAGAAGACAATGGAAGATTTGACTAGAGAACTAGAGCATATAGACCAGGGAAATGCTGCTAGTCATAATGAGTACGAATTCAACAATGAAGATCGGGATCCATTATTTGTTGCAAATGTCAGTCATTTCTGCTCTGGCTTGTCAAAGGCAGGATCAGCTCGGTGGGTTCGAGGAAATGATTAA 1665 42.04 MAFQIEPPNEPHEQNPLKFITHFFHSSTSNFCTLFANPQSIPSFSLQSSSSRLCFPVAFPASRKPLFLSHSGFYSTHHDLDSSKSAAVKGLSSSPEFSSGFPSTLRISGLNSDGKAGGPAFVGQVFSMCDLSGTGLMAVSTHFDIPFISKRTPEWLKKMFSTITKSERNGPIFRFFTDLGDAATVHYILTQNICFLVTYVKRLNIPSAVVGACRLDLAYEHFKEKPHLFQFIPNEKQVKAANKLLKGLPQNGGSKKIDGVPVFSAQNLDIAIATTDGIKWYTPYFFDKNMLDNILEESVDQHFHALIQTRRLQRRREIVDDNAAAEVQEVMDEMGNPGIPLSVISKVAEMQLLYTVDKVILGNRWLRKAVGIQPKFPYMVDSFERRSAASLLRISESASSLTNSESMKETKELQYHSSSPLNVQDNREAIQEPKQHSFNPFRNWFSHLWSKQRQGDDFPQERTKQNAQPSPFLPKITMVGISTGDSGHTSKANLKKTMEDLTRELEHIDQGNAASHNEYEFNNEDRDPLFVANVSHFCSGLSKAGSARWVRGND 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 649526 656370 - Lsi09G000770.1 Lsi09g00077 669690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00077 554 MobiDBLite consensus disorder prediction 455 475 - -
Lsi09g00077 554 PANTHER OS01G0225300 PROTEIN 8 553 - -
Lsi09g00077 554 Coils Coil 491 511 - -
Lsi09g00077 554 Pfam Tic22-like family 222 298 IPR007378 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00077 - - - bhj:120067161 1001.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g786 . . . Bda07g01903 Bpe03g00159 . . Bma14g02039 . . Cma02g01082 Cma15g01069 Car02g00967 Car15g00989 . Cpe05g00638 . . . . . . . . Cla01g00090 Cam01g0091 Cec01g0091 Cco01g0092 Clacu01g0089 Cmu01g0091 Cre09g2416 . . Cone14ag0051 Cone15ag0056 . Csa05g00102 Chy09g01392 . . Blo09g00056 . . . . . . . Cmo02g01100 Cmo15g01125 . . . . . Cpe13g00276 Bhi12g00775 . . Lac11g0078 Hepe06g0725 . Lcy12g0060 . . . . . . . Lsi09g00077 . . Cme09g01937
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009670 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00077 Lsi_Chr09 FPKM 10.070781 10.651614 8.5168 8.966487 15.336171 16.555553 15.581532 13.372333 13.34623 13.162831