Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00082 ATGGAATTACTGCCTCAGGATTCAAATGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACGGAAGCGGCTCTCATTAAACTGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGGCCAAAGCGTGGAGAGCCACGAGGATTTGCCTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGCGGTCGTCCGTTGGTTGTCCGCCTTGCCAGTGAAAAGTTCATGACCAATGCAACAAATGATACTTCAAGAGCAGCAGGCGAGTCGAGCAAATTGAGACTCGGTGGCAGCAGTTACGGACAGTTGACTCGCAGCGATAAGATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGCCTGAAAAAACAGAAGCAAGATAATGTTGATAAGTCATCGCTCAAGACATCCTGA 513 44.44 MELLPQDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDNVDKSSLKTS 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 702995 703834 + Lsi09G000820.1 Lsi09g00082 669695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00082 170 MobiDBLite consensus disorder prediction 107 126 - -
Lsi09g00082 170 SUPERFAMILY RNA-binding domain, RBD 12 104 IPR035979 GO:0003676
Lsi09g00082 170 CDD RRM_RBM18 19 98 IPR039157 -
Lsi09g00082 170 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 161 - -
Lsi09g00082 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 99 IPR000504 GO:0003723
Lsi09g00082 170 PANTHER RNA-BINDING PROTEIN 18-RELATED 13 161 - -
Lsi09g00082 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 92 IPR000504 GO:0003723
Lsi09g00082 170 MobiDBLite consensus disorder prediction 156 170 - -
Lsi09g00082 170 MobiDBLite consensus disorder prediction 146 170 - -
Lsi09g00082 170 SMART rrm1_1 19 95 IPR000504 GO:0003723
Lsi09g00082 170 Gene3D - 15 110 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00082 K24527 RBM18; RNA-binding protein 18 - csv:101215222 296.204
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00082 Lsi-Chr9:702995 Lsi05g01351 Lsi-Chr5:21375433 2.29E-11 dispersed
Lsi09g00082 Lsi-Chr9:702995 Lsi05g00226 Lsi-Chr5:3013456 6.35E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g748 . Blo15g00177 . . . Bpe07g00927 . . . . Cma02g01078 . Car02g00821 . . Cpe05g00641 . . . . . . . . Cla01g00094 Cam01g0096 Cec01g0096 Cco01g0097 Clacu01g0094 Cmu01g0096 Cre09g2411 . . Cone14ag0061 Cone15ag0064 . Csa05g00109 Chy09g01386 . . . Bda06g00694 . . . . Bma12g01110 . Cmo02g01095 . . . . . . . Bhi12g00787 . . . . . . . . . . . . . Lsi09g00082 . . Cme09g01931
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007148 1 7 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00082 Lsi_Chr09 FPKM 10.450397 9.19943 329.899139 316.257935 2108.802734 2189.744873 1953.758301 16.120556 13.681269 16.176571