Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00087 ATGGAAGCTCCTTTGCTCAATGGCGTCGCCGACGCCGACTATCAGCCACTCAAAACTTTCAGCGACGCCAATCGTGTCTTCTTCGCTGAGACGACCAAGCTCTGGAAGATTGCGGCGCCGATTGTGTTTGGTATAATCTGTCAGTACGGAATCAACTCACTCACTAGCATTTTCGTCGGCCATATCGGCGACGTTGAGCTTTCCGCCGTTTCTATCTCTGTTTCCGTCATCGGAACCTTCGCCTTCGGCTTCATGCTTGGTATGGGAAGTGCACTGGAGACGCTGTGTGGTCAAGCTTATGGCGCTGGACAAGTTTACTTGCTTGGTGTTTATATGCAACGTTCATGGATTATTCTCACAGTCTCCAGCTTCTTCATTCTACCAATTTACTGGTATGCTGAACCACTCCTGAAGTTTCTAGGACAAGCAGATGAAATAGCTGAAGTTGCAGGATGGTTCACAAGGTTGCTAATTCCTGAACTCTTCTCACTGGCAGTCGTTTTTCCCACCCAAAAGTTCCTTCAAGCACAGAGCAAGGTCAATGTCCTTGCCTATATTGGGTTTTTGGCCTTGTTATTACATGCTGCAATGCTCTGGCTCTTTATTTTCGTATTCAACTGGAACCTCACTGGTGCAGCTATTGCAAGCAACATTTCAAGTTGGGTTACTGCTATAGCACAAGTTATCTATGTTGTTGGCTGGTGTAAAGATGGATGGACTGGTTTGTCTCGGGCGGCTTTCAATGATATATGGGCCTTTGTTGGCCTTTCCTTTTCATCCGCAGTAATGCTTTGCCTTGAACTCTGGTATATGATGAGTATAATTATTCTTACTGGCCATCTTGATAACGCGGTGTATGCTGTTGGTTCCCTTTCAATTTGCCCTGCACCCTTCAGTAGTTCGTACAACAAAATTAAGCATGAATATCAACGGATTGGAGGCAATGTTATTCATAGCGTGCGGGTTTCCAATGAGCTTGGACAAGGACATCCAGTGGCAGCCAAATATTCTGTCTATGTTACAGTATTTCAGTCTCTTCTTCTAGGATTACTTTCCATGGTGATTATCTTAATCACGAAGGATGATTTTGCTGTCATTTACACCAGCAGCAAAGAAATGCAAGCTGCTGTCTCTAAACTAGCATACCTTCTTGGAATCACCATGGTTCTCAACAGTGTCCAACCGGTAATTTCAGGTACCAAATCCACCATGTTTTACAAGTCTACACCAAGCGTTGCTATTGGAGCTGGTTGGCAAACTTTGGTAGCATACATCAATCTTGGCTCTTATTATGCTTTTGGTCTCCCCCTTGGTTATCTTCTTGGTTATACAAAACATTTGGGGGTTCAGGGACTCTGGGGAGGCATGATCTGTGGACTCTCTCTCCAAACCATTCTGCTTCTGATTATACTCTATAAAACAAACTGGACCCATGAGGTGAATCAGTCAATAGAACGGATGAAAAGATGGGGAGGACAAGAGGTCAAAATTGACAATACAGCTGATTACATATGA 1515 44.29 MEAPLLNGVADADYQPLKTFSDANRVFFAETTKLWKIAAPIVFGIICQYGINSLTSIFVGHIGDVELSAVSISVSVIGTFAFGFMLGMGSALETLCGQAYGAGQVYLLGVYMQRSWIILTVSSFFILPIYWYAEPLLKFLGQADEIAEVAGWFTRLLIPELFSLAVVFPTQKFLQAQSKVNVLAYIGFLALLLHAAMLWLFIFVFNWNLTGAAIASNISSWVTAIAQVIYVVGWCKDGWTGLSRAAFNDIWAFVGLSFSSAVMLCLELWYMMSIIILTGHLDNAVYAVGSLSICPAPFSSSYNKIKHEYQRIGGNVIHSVRVSNELGQGHPVAAKYSVYVTVFQSLLLGLLSMVIILITKDDFAVIYTSSKEMQAAVSKLAYLLGITMVLNSVQPVISGTKSTMFYKSTPSVAIGAGWQTLVAYINLGSYYAFGLPLGYLLGYTKHLGVQGLWGGMICGLSLQTILLLIILYKTNWTHEVNQSIERMKRWGGQEVKIDNTADYI 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 779941 784480 + Lsi09G000870.1 Lsi09g00087 669700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00087 504 TIGRFAM matE: MATE efflux family protein 40 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi09g00087 504 CDD MATE_eukaryotic 30 480 IPR045069 GO:0042910|GO:1990961
Lsi09g00087 504 PANTHER PROTEIN DETOXIFICATION 318 480 - -
Lsi09g00087 504 PANTHER PROTEIN DETOXIFICATION 26 294 - -
Lsi09g00087 504 PANTHER MULTIDRUG RESISTANCE PROTEIN 318 480 - -
Lsi09g00087 504 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 294 - -
Lsi09g00087 504 Pfam MatE 40 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi09g00087 504 Pfam MatE 260 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00087 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101213682 847.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00295 Lsi-Chr2:2557003 Lsi09g00087 Lsi-Chr9:779941 0 dispersed
Lsi09g00087 Lsi-Chr9:779941 Lsi09g01579 Lsi-Chr9:23929254 6.98E-165 dispersed
Lsi09g00087 Lsi-Chr9:779941 Lsi01g00797 Lsi-Chr1:6262876 3.70E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g741 . . . Bda07g01895 Bpe03g00147 . . . . . . . . Car15g00995 . . . . . . . . . . . . . . . . . . . . . . . Chy09g01381 . . Blo09g00070 . . . . . . . . . . . . . . Cpe13g00267 Bhi12g00020 . . . . . Lcy12g0048 . . . . . . . Lsi09g00087 . . Cme09g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000562 2 4 7 5 5 3 4 3 3 4 3 3 4 3 4 4 3 5 4 3 3 5 3 3 3 3 3 3 3 3 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00087 Lsi_Chr09 FPKM 6.055286 7.604623 17.184172 18.842064 7.605267 7.423048 6.408576 22.206646 22.19356 21.589281