Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00092 ATGTGGTTATTCAGAAGAAAAGGGCCCTCTGGGTTTTCGTCTTCTTCCACTGCCGAGGAAGTTACTGACGGAATCGATGGCACTGGTCTTACCGCCATTGTTACAGGAGCATCTAGCGGTATTGGCTCTGAAACTGCACGTGTTCTTGCATTACGTGGAGTCCATGTCATTATGGGTGTTAGGAATTTAGAAGCTGGTAGAAATGTCAGCGAAACCATCGTCAAGGAGAATCCCTCTGCAAAAATTGATGCCATGGAATTGGATCTTAGCTCCACGGCATCTGTAAGAAAATTCGCCTCAGATTACCAGTCATCCGGGTTTCCACTTAACATCCTCATTAACAATGCAGGAATAATGGCTACCCCTTTTGGACTTTCAAAAGATAACATAGAGCTGCAATTCGCAACAAACCACTTGGGCCATTTCCTTTTGACAAATCTACTTTTGGAAAACATGAAGAAAACTGCGGCTGAAAGTAAGAAAGAAGGAAGAATTGTAAATGTCTCCTCGGAAGCTCATCGTTACACATATCCTGAAGGCATCCGATTCGATGGAATTAACGATGAATCAAGGCTGCCTGGATTAGATGCGTCAGTGAAGGATTTAGTCGAAAATATGAATAAGATACTGCAGCAGATGGACAGTCAGAGGAAAATTGTGGAAGAACAACAGAAAAGTCTAGGAGCGATGTTTCACAATCTAGAGGAACAGAGAAACTCAACCGATGAAACTCAGAGAGCCATATCAACCCTTGCTCGAGGATTGACTAACAATCGTTCACCAGATGATCGAGTGGCCCAACCAAAGCGGAAGTATCCGGAAGGTATAATAAAATGCAGGCTTATGGCCAGTCGAAGTTATCTAATGTTTTGCATGCCAATGAACTTACAAGATGTTTCAAGTCAATTCTATCATTACTTCTCTACCCTATCGTCACTTTGGGCTTTGAGGACATCTGATAAAATTGGAACGGTACTTATTGGTGTGTCTGATAAAGATGTTCTTCATATGAAAGTCTGCTGA 1023 42.33 MWLFRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGVRNLEAGRNVSETIVKENPSAKIDAMELDLSSTASVRKFASDYQSSGFPLNILINNAGIMATPFGLSKDNIELQFATNHLGHFLLTNLLLENMKKTAAESKKEGRIVNVSSEAHRYTYPEGIRFDGINDESRLPGLDASVKDLVENMNKILQQMDSQRKIVEEQQKSLGAMFHNLEEQRNSTDETQRAISTLARGLTNNRSPDDRVAQPKRKYPEGIIKCRLMASRSYLMFCMPMNLQDVSSQFYHYFSTLSSLWALRTSDKIGTVLIGVSDKDVLHMKVC 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 816008 825801 + Lsi09G000920.1 Lsi09g00092 669705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00092 340 Pfam short chain dehydrogenase 31 180 IPR002347 -
Lsi09g00092 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 179 IPR036291 -
Lsi09g00092 340 Gene3D - 22 207 - -
Lsi09g00092 340 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Lsi09g00092 340 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Lsi09g00092 340 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Lsi09g00092 340 MobiDBLite consensus disorder prediction 1 21 - -
Lsi09g00092 340 Coils Coil 203 223 - -
Lsi09g00092 340 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 201 - -
Lsi09g00092 340 PANTHER RETINOL DEHYDROGENASE 2 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00092 - - - csv:101214020 348.591
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02016 Lsi-Chr1:27555000 Lsi09g00092 Lsi-Chr9:816008 4.14E-06 dispersed
Lsi02g00396 Lsi-Chr2:3360875 Lsi09g00092 Lsi-Chr9:816008 3.30E-18 dispersed
Lsi06g01573 Lsi-Chr6:26144841 Lsi09g00092 Lsi-Chr9:816008 7.60E-28 dispersed
Lsi09g00092 Lsi-Chr9:816008 Lsi09g00172 Lsi-Chr9:1794538 2.30E-36 dispersed
Lsi09g00775 Lsi-Chr9:8798054 Lsi09g00092 Lsi-Chr9:816008 1.49E-13 dispersed
Lsi09g00092 Lsi-Chr9:816008 Lsi09g00093 Lsi-Chr9:828349 8.98E-94 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
Vvi16g726 . . . . . . . . . . . . Car02g00817 . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01374 . . . . . . . . . . . . . . . . . Cpe13g00109 . . . . . . . . . . . . . . Lsi09g00092 . . Cme09g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00092 Lsi_Chr09 FPKM 13.1203 11.620334 32.005993 33.000477 6.650614 5.690301 7.486361 18.462835 21.119215 29.010567