Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00093 ATGTGGTTTCTTAGCAAGAAAGGGGCATCTGGGTTCTCAGCTTCTTCCACAGCTGAAGAAGTTACAGAAGGAATCGATGGGACAGGTCTCACAGCCATTGTTACAGTTTCACTTTTGAAGGAGCCTGAATTTTCTCATCATAGGGTCTTCTGCATTAACACAGGCGCATCAAGTGGCATTGGTACTGAAACCGCTCGTGTCCTTGCGTTGCGCGGAGTACATGTAGTAATGGCGGTTAGGAATGTAGTAACTGGTAGGGAGGTCCAAGAAGCCATTGTCAAGGAAAACCCAACTGCCAAAGTTGATACCATGGAGTTGGACCTGAGCTCAATGGCATCTGTTCAGAATTTTGCATCAAATTTCAAGTCCTCAGGTCTTCCACTGAACATTCTCGTTAATAATGCAGGAGTCATGGCTTCCCCTTTCTTGCTCTCGAAGGACAAGATAGAATTGCAATTTGCAACAAACCATGTGGGACATTTTCTTTTGACAAATCTTTTGTTAGAGACATTGAAAAAGACAGCAAAAGAAAGTAACAAAGAAGGAAGGATTGTCAATGTCTCATCACGACGGCACCAATTTTCATATCGTGAAGGCATCCGATTTGACAAAATCAATGATCGATCAAGGTCTTCTTTCTATCACCCTTTGCTATAA 657 42.77 MWFLSKKGASGFSASSTAEEVTEGIDGTGLTAIVTVSLLKEPEFSHHRVFCINTGASSGIGTETARVLALRGVHVVMAVRNVVTGREVQEAIVKENPTAKVDTMELDLSSMASVQNFASNFKSSGLPLNILVNNAGVMASPFLLSKDKIELQFATNHVGHFLLTNLLLETLKKTAKESNKEGRIVNVSSRRHQFSYREGIRFDKINDRSRSSFYHPLL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 828349 830112 + Lsi09G000930.1 Lsi09g00093 669706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00093 218 PANTHER RETINOL DEHYDROGENASE 2 210 - -
Lsi09g00093 218 Pfam short chain dehydrogenase 54 191 IPR002347 -
Lsi09g00093 218 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 198 IPR036291 -
Lsi09g00093 218 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED 2 210 - -
Lsi09g00093 218 Gene3D - 28 216 - -
Lsi09g00093 218 PRINTS Glucose/ribitol dehydrogenase family signature 176 192 IPR002347 -
Lsi09g00093 218 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Lsi09g00093 218 PRINTS Glucose/ribitol dehydrogenase family signature 50 67 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00093 - - - csv:101213775 320.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00093 Lsi-Chr9:828349 Lsi09g00172 Lsi-Chr9:1794538 9.67E-30 dispersed
Lsi09g00092 Lsi-Chr9:816008 Lsi09g00093 Lsi-Chr9:828349 8.98E-94 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1173 Cone5ag0880 Cone14ag0073 Cone15ag0076 . . Chy09g01373 . . . . . . . . Bma12g01115 . . . . . . . . . Bhi12g00030 . . Lac11g0045 . . Lcy12g0042 . . . . . . . Lsi09g00093 . . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00093 Lsi_Chr09 FPKM 37.582226 37.490494 41.941608 46.303829 26.230564 23.019299 24.570248 64.371422 62.553547 59.634991