Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00095 ATGGATGCAGGATCTTTGAGTTCTTCTTCTAAATCTAATCACTCTCGCTTTCCCCTTCAAGAACAGCAACTCCAGAAAAAGCATTCCAAAGAAAATTTGGATAGGTTTATCCCGAATCGATCGGCTATGGATTTCGATTATGCGCATTACATGGTTACTGAGGGGAGGAAAGGTAAGGAAAATCCTTCTGTTAGTTCGCCGTCTAAGGAAGCTTATCAGAAGCGGTTGGCTGAGACACTGAACATGAATCGAACTCGAATCCTTGCGTTCAAGAACAAACCTCCTGCACCAGTTGAGATGATACCTAAGGAGTTCTTCTCCTCTGTTTCTCATGATAAACCCGTCAAGGCCCGCCGCCATATCCCTCAGACCTCTGAAAAGACATTGGATGCTCCTGATCTTGTTGATGATTACTACTTGAACTTATTGGATTGGGGCAGCAGCAATGTGCTTGCTATAGCTCTTGGGAACAGTGTGTATTTGTGGAATGCACAAGATGGTTCTACTTCAGAACTTGTAACGGTTGATGATGAAGTTGGTCCTGTAACAAGTGTGAATTGGGCTCCTGATGGAAGACACATTGCTGTTGGGTTGAACAATTCTGAAGTACAGCTTTGGGATTCGCTCTCTAATCGACAGCTAAGAACTTTGAGGGGTGGCCATAGGATGCGAGTGGGCTCACTGGCATGGAACAACCACATTCTCACAACTGGAGGAATGGATGGAAAGATCATTAACAATGATGTGAGAATTAGAGATCACATAGTGGAAACTTATAGAGGCCATGATCAAGAGGTCTGTGGGCTTAAATGGTCATTATCTGGACAACAATTAGCAAGTGGAGGGAATGACAATGTCCTCCATATCTGGGACAGATCAACAGCATCTTCAAACTCAGCTACCCAATGGCTTCACAGGCTTGAGGATCATACTTCTGCAGTCAAGGCCCTTGCATGGTGTCCATTCCAAGGCAACTTGCTCGCATCCGGTGGAGGCAGTGGCGATCGTTCCATCAAGTTTTGGAACACCCACACTGGAGCATGTTTGAATTCTGTTGATACTGGTTCTCAAGTATGTGCTCTACTATGGAATAAAAATGAGAGAGAGCTGCTCAGCTCCCATGGGTTCGCCCAGAACCAGCTCACTCTTTGGAAATACCCTTCAATGGTGAAGATGGGAGAGATCACCGGTCATACATCAAGAGTTCTCTTCATGGCTCAGAGTCCAGATGGGTGCACTGTGGCTTCAGCAGCAGCAGATGAAACATTGAGATTATGGCATGTTTTTGGGGCTCCTGAAGTAGCTAAACCCACACCAAAATCCTATAATACAGAGCCCTTTGCTCATATCAATCGCATTCGGTGA 1365 45.35 MDAGSLSSSSKSNHSRFPLQEQQLQKKHSKENLDRFIPNRSAMDFDYAHYMVTEGRKGKENPSVSSPSKEAYQKRLAETLNMNRTRILAFKNKPPAPVEMIPKEFFSSVSHDKPVKARRHIPQTSEKTLDAPDLVDDYYLNLLDWGSSNVLAIALGNSVYLWNAQDGSTSELVTVDDEVGPVTSVNWAPDGRHIAVGLNNSEVQLWDSLSNRQLRTLRGGHRMRVGSLAWNNHILTTGGMDGKIINNDVRIRDHIVETYRGHDQEVCGLKWSLSGQQLASGGNDNVLHIWDRSTASSNSATQWLHRLEDHTSAVKALAWCPFQGNLLASGGGSGDRSIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFAQNQLTLWKYPSMVKMGEITGHTSRVLFMAQSPDGCTVASAAADETLRLWHVFGAPEVAKPTPKSYNTEPFAHINRIR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 832911 835529 - Lsi09G000950.1 Lsi09g00095 669708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00095 454 CDD WD40 157 426 - -
Lsi09g00095 454 MobiDBLite consensus disorder prediction 1 20 - -
Lsi09g00095 454 MobiDBLite consensus disorder prediction 21 36 - -
Lsi09g00095 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515
Lsi09g00095 454 SUPERFAMILY WD40 repeat-like 138 427 IPR036322 GO:0005515
Lsi09g00095 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 428 IPR001680 GO:0005515
Lsi09g00095 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 207 - -
Lsi09g00095 454 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 452 - -
Lsi09g00095 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 300 IPR001680 GO:0005515
Lsi09g00095 454 MobiDBLite consensus disorder prediction 1 36 - -
Lsi09g00095 454 SMART WD40_4 252 291 IPR001680 GO:0005515
Lsi09g00095 454 SMART WD40_4 210 248 IPR001680 GO:0005515
Lsi09g00095 454 SMART WD40_4 168 207 IPR001680 GO:0005515
Lsi09g00095 454 SMART WD40_4 388 427 IPR001680 GO:0005515
Lsi09g00095 454 SMART WD40_4 345 385 IPR001680 GO:0005515
Lsi09g00095 454 SMART WD40_4 300 342 IPR001680 GO:0005515
Lsi09g00095 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Lsi09g00095 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 428 - -
Lsi09g00095 454 Gene3D - 83 430 IPR015943 GO:0005515
Lsi09g00095 454 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 452 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lsi09g00095 454 Pfam Anaphase-promoting complex subunit 4 WD40 domain 174 232 IPR024977 -
Lsi09g00095 454 Pfam WD domain, G-beta repeat 392 426 IPR001680 GO:0005515
Lsi09g00095 454 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Lsi09g00095 454 Pfam WD domain, G-beta repeat 304 342 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00095 K03363 CDC20; cell division cycle 20, cofactor of APC complex - csv:101213539 903.279
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01225 Lsi09g00095 CCT
Lsi05g01225 Lsi09g00095 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01229 Lsi-Chr3:22876326 Lsi09g00095 Lsi-Chr9:832911 0 dispersed
Lsi09g00095 Lsi-Chr9:832911 Lsi09g00323 Lsi-Chr9:3356813 3.19E-111 dispersed
Lsi09g00095 Lsi-Chr9:832911 Lsi02g02285 Lsi-Chr2:29422484 8.97E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g676 . . . . Bpe03g00111 . . Bma14g02084 . . Cma02g01068 Cma15g01098 Car02g00811 Car15g01009 . Cpe05g00651 . . . . . . . . Cla01g00433 Cam01g0456 Cec01g0445 Cco01g0467 Clacu01g0455 Cmu01g0434 Cre09g2078 . Cone5ag0867 . . Lsi05g01225 . . . . Blo09g00112 . . . . . . . Cmo02g01086 Cmo15g01156 Cma16g00125 . . Car18g01154 Cpe09g00090 Cpe13g00253 Bhi12g00511 . . . Hepe06g0702 . . Cla05g00883 Cam05g0971 Cec05g0975 Cco05g0975 Clacu05g0958 Cmu05g0915 Cre05g0999 Lsi09g00095 Csa03g01712 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001497 1 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 2 1 2 3 4 2 2 5 3 6 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00095 Lsi_Chr09 FPKM 0.0 0.0 0.09495 0.111001 5.44016 5.684385 4.783683 0.0 0.0 0.065663