Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00101 ATGCCGGAATCGGAAAGTGGAACGCCGGTTGCGTCGGCGCCGGCGACGCCGGGGACGCCGGGAGGGCCGCTGTTTTCCGGCCTCCGAGTCGATTCTCTATCGTACGATCGGAAGTCAATGCCGCGGTGTAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCAACCTCACACGTGCTTCACTGACTTCCCTGCTCCTGATGTCTCTCTCACCCGCAAGTTGGGAGCAGAATTTGTGGGAACATTCATCTTGATATTTGCTGCGACGGCAGGGCCCATTGTCAACCAAAAGTACAACGGCGTCGAGACTCTGATTGGCAATGCCGCGTGCGCCGGCCTGGCGGTGATGATCGTAATTCTATCGACGGGACATATTTCCGGCGCCCACCTGAACCCGTCGCTCACTATTGCCTTTGCCGCCCTCCGCCATTTCCCTTGGGTTCAAGTCCCCGCCTACATCGCCGCCCAGGTCTCCGCCTCCATTTGCGCCTCCTTCGCTCTTAAAGGGGTTTTTCACCCTTTCATGTCCGGTGGCGTCACCGTCCCCTCCGTCAGCACTGGCCAAGCCTTTGCTCTTGAATTTATCATCACTTTCAATCTCTTGTTTGTTGTCACCGCGGTTGCCACTGATACTCGCGCGGTTGGAGAGTTAGCTGGAATTGCAGTTGGAGCTACAGTGATGCTTAACATTCTCGTCGCCGGGCCCTCAAGCGGTGGTTCCATGAACCCGGTTCGAACTTTGGGCCCTGCCGTGGCTGCCGGAAATTACAGAGAATTATGGGTGTATTTGGTGGCGCCGACGCTGGGGGCCATAGTTGGCGCCGGAACTTACACCGCTGTGAAGCTCCGAGACGACGAAGTGGATGCTCCGTCGCAGGTAAGGAGCTTCCGGCGTTGA 897 57.97 MPESESGTPVASAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGQPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRELWVYLVAPTLGAIVGAGTYTAVKLRDDEVDAPSQVRSFRR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 900849 907406 + Lsi09G001010.1 Lsi09g00101 669714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00101 298 MobiDBLite consensus disorder prediction 1 24 - -
Lsi09g00101 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00101 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00101 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00101 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00101 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00101 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00101 298 PANTHER AQUAPORIN NIP5-1 ISOFORM X1-RELATED 9 296 - -
Lsi09g00101 298 PANTHER AQUAPORIN NIP2-1 9 296 IPR034294 -
Lsi09g00101 298 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
Lsi09g00101 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00101 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Lsi09g00101 298 Gene3D Glycerol uptake facilitator protein. 64 292 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00309 Lsi-Chr5:3961833 Lsi09g00101 Lsi-Chr9:900849 5.66E-62 dispersed
Lsi05g01452 Lsi-Chr5:22377389 Lsi09g00101 Lsi-Chr9:900849 6.32E-42 dispersed
Lsi07g00405 Lsi-Chr7:4368172 Lsi09g00101 Lsi-Chr9:900849 2.13E-82 dispersed
Lsi09g00101 Lsi-Chr9:900849 Lsi02g02816 Lsi-Chr2:34324196 3.37E-29 dispersed
Lsi09g00101 Lsi-Chr9:900849 Lsi09g00102 Lsi-Chr9:909810 2.20E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00101 K09874 - csv:101212651 564.303