Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00102 ATGTCGCCATTCGAGGGCATACACATGGACGCCCCAAAACGGAGGCAAACTCTTGATGTTTCTCTCACTCGAAAGGTGGGAGCAGAATTTGTGGGCACGTTCATCCTCATATTTGCTGCAACAGCCGCACCCATCATCAACCAAAAGTACAACTTTGTCATGTCATTGATCGGAAACGCCGCATGCGCCGGCCTAGCGGCAATGGTCGTAATTCTCTCGACGGGACATATCTCCGGCGGCCACCTGAACCCGTCGCTAACCATTGCCTTGGCTACCTTCCGCCACTTCCCTTGGACCCATGTCCCCGCCTACATTGCCGCCCAAGTCTTAGCCTCCATTTGTGCCTCCTTCGCTCTTAAAGGCGTTTTTTACCCTTTCATGTCCGGCGGCGTCACTGTCCCCTCTGTTGGCATTGGTCAGGCCTTCGCTTTCGAATTCCTCATCACCTTCAATCTCTTGTTTGTTGTCACCGCCATTGCTACTGATAATCGAGCTGTTGGAGAGTTGGCCGGAATTGCTGTTGGAGCTACAGTGATGCTCAACATTCTTATTGCTGGGCCATCCACCGGTGGTTCGATGAACCCAGTAAGGACTCTAGGCCCCGCCGTGGCTGCTGGAAATTATAGAGAACTGTGGGTGTACATGGTGGCTCCTACACTCGGGGCAATCGTCGGTGCCGGAACCTACACCGCCGTGAAGCACAAAGATGATGAAATGGATGTTCCGCCGCAGGTGAGGAGCTTCCGTCGATGA 753 53.65 MSPFEGIHMDAPKRRQTLDVSLTRKVGAEFVGTFILIFAATAAPIINQKYNFVMSLIGNAACAGLAAMVVILSTGHISGGHLNPSLTIALATFRHFPWTHVPAYIAAQVLASICASFALKGVFYPFMSGGVTVPSVGIGQAFAFEFLITFNLLFVVTAIATDNRAVGELAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAVAAGNYRELWVYMVAPTLGAIVGAGTYTAVKHKDDEMDVPPQVRSFRR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 909810 913100 + Lsi09G001020.1 Lsi09g00102 669715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00102 250 PANTHER AQUAPORIN NIP5-1-RELATED 16 247 - -
Lsi09g00102 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lsi09g00102 250 Gene3D Glycerol uptake facilitator protein. 7 243 IPR023271 -
Lsi09g00102 250 PANTHER AQUAPORIN NIP2-1 16 247 IPR034294 -
Lsi09g00102 250 Pfam Major intrinsic protein 20 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00102 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00102 250 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00102 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00102 250 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00102 250 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00102 250 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00102 250 SUPERFAMILY Aquaporin-like 17 239 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00215 Lsi-Chr1:1970376 Lsi09g00102 Lsi-Chr9:909810 9.24E-08 dispersed
Lsi09g00102 Lsi-Chr9:909810 Lsi02g02816 Lsi-Chr2:34324196 1.89E-31 dispersed
Lsi09g00101 Lsi-Chr9:900849 Lsi09g00102 Lsi-Chr9:909810 2.20E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00102 K09874 - csv:101212485 424.091