Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00103 ATGGGTTTGCTCAAATTCTTTAGAGTTAAGAGAAAATCTAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTCAAATTGAAGAGGGTTCTTTTGCTACAAGGTTTCGGTGGACTGACATCGAGGCTTTCACTAAGAATTTCTCCACTCTTGTCGGCTCCGGCGGCTTCAGCAACGTTTATCTTGCTCGGACGGCGCCGGGAACGGCGGCGGCGGTTAAGATTTTGGGCGCTAGTGAGCGGCTCAACCGGATGTTCCGCCAGGAATTGGACATTCTTCTCCAGCTCCGTCACCGGAATATTGTCAATTTCGTTGGCTATTGCGATGAACGAGATGAAGGAGCCTTGGTATTCGAATATGTCCCTAATGGGAACTTACAAGAGAAGCTCCACAGCCGGCCGACGACCGCGAAGACGGCGGCAGCGGCGGTTCTTCCATGGAAACTCCGGCTACTCATAGCCTTTCAATTAGCTCAAGCAATTGAATACCTCCATGAGAAATGCAGTTTACAAATCGTTCACGGCGACATAAAATCATCGAACATTTTACTGGACGAACAATTCAATTGCAAATTATGCGATTTCGGGTCTGCAAAAATGGGATTTTCATCGGCGGTGGGGAATCCGTCGTCGTCGCCGCCTCCGTCGAACCCCTTCAGAGCGAAGCAATTGATGATGGGATCTCCAGGATACACAGATCCCCAATATTTAAGAACCGGAATTGCTTCAAAGAAAAACGACATTTACAGTTTCGGCGTTGTTCTTTTAGAGCTAATCACCGGAAAAGAGGCTTTCTGCTCGGAGAAGGGTCAGATTCTGACATCAATTTTACCTCCGGCTGTTCGTGACGGCGGAGTAATTAAACTGTCGGCGGTGGCGGAACTAGTGGATCCGAAACTCCGGGGAGATTACGACGGCGATGAAGCCGGAGCGTTGATTTCAATTGCGGCGGCCTGCGTGACGCAGCCGCCGTCACCGAGGCCGACGATCGGCGGCGTGCTGCAGATGATGAGGGAGAAGATAGGGAATGTTGGCGACAGGGTATGGGCGGTGAAACGTGGCAGTAAATCATTGGATGTGGGGAGATGGTAA 1089 50.05 MGLLKFFRVKRKSKVADKKTVLDAQIEEGSFATRFRWTDIEAFTKNFSTLVGSGGFSNVYLARTAPGTAAAVKILGASERLNRMFRQELDILLQLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHSRPTTAKTAAAAVLPWKLRLLIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDEQFNCKLCDFGSAKMGFSSAVGNPSSSPPPSNPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQILTSILPPAVRDGGVIKLSAVAELVDPKLRGDYDGDEAGALISIAAACVTQPPSPRPTIGGVLQMMREKIGNVGDRVWAVKRGSKSLDVGRW 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 913934 915867 - Lsi09G001030.1 Lsi09g00103 669716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00103 362 Gene3D Phosphorylase Kinase; domain 1 7 119 - -
Lsi09g00103 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lsi09g00103 362 Pfam Protein kinase domain 49 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00103 362 PANTHER BNAA02G22020D PROTEIN 18 345 - -
Lsi09g00103 362 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 18 345 - -
Lsi09g00103 362 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Lsi09g00103 362 ProSiteProfiles Protein kinase domain profile. 45 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00103 362 SUPERFAMILY Protein kinase-like (PK-like) 31 336 IPR011009 -
Lsi09g00103 362 CDD STKc_IRAK 51 336 - -
Lsi09g00103 362 SMART serkin_6 45 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00103 362 Gene3D Transferase(Phosphotransferase) domain 1 120 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00103 Lsi-Chr9:913934 Lsi02g02974 Lsi-Chr2:35839759 3.99E-18 dispersed
Lsi09g00103 Lsi-Chr9:913934 Lsi02g02962 Lsi-Chr2:35745867 1.87E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83871 PF00069 Pkinase 2.50E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00103 - - csv:101212406 595.89