Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00104 ATGGAAGGAGCTGCAGGTGGATCGGGATCAGGATTAGGATTACCTGATCGATCTCAATTATTCGGAGGAGTTTCCACACCGCCGCCGCCCTTAACCGTCGATGCCACCATAAGTGATTCTCAGCAAGTCGAAGCTGCTTCTCCGATTAGTAGTCGACCTCCAGCAGTACCGTCTTCGTTAAATTATGAGGAACTCATTCGTCTCAGCGGTGGCAGCGGTGGTCAGATGGTGGTTGACGACGAAGAAGGTGACCGTAGCGGCGGCGGAAGCGGTGGTAATCGGTGGCCGCGTCAAGAAACACTTGCTTTGCTTAAAATTAGGTCAGAGATGGATTCAGCGTTTCGTGATGCTACACTGAAAGGACCTCTGTGGGATGAGGTCTCCAGGAAGTTAGGGGAAATGGGGTATAAGAGAAATGCAAAAAAATGCAAAGAGAAATTCGAGAATGTTCAAAAATATTACAAACGCACAAAAGAAGGAAGAGGAGGGCGTCAAGATGGAAAAACCTACAAATTCTTTACGCAACTTGAGGCTCTTCATAACGCAAACGTGGCGCCTTCTTCTTCTTCATTCACACTGCCACAGCCCACCAACGTTGCCTTTGGGATTAGCAACCCAACTCCAATCTCATCCGTCAAAATTTCATCATCTTCTTCACAAACCCCAATGGGAATCTTTTCTTCTCCACCAGATCATTTCACCGTCCGGCCACCACCCACCGTCGCTGCTCCTATGGGTGTTAGCTTTTCGTCGAACACCTCATCTGCATCCACTGAGGATGATGATAACGATGAGGATGAAGAGATGAGGTTTGATGTTGACCTTGAAGGGTTGCCGGAGAATGTAGCGGGAAGTAGTCGGAAGCGGCGGAGAGGGGTGGTTAAAGGGAATGAGTCAAGAACTCATAAGATGATGATGGAGTTTTTCGAGGGTTTGATGAAACAAGTGATAGAGAAACAGGAAGTTATGCAACAGAAGTTTTTGGAAGCGATTGAGAAAAGGGAACAAGATAGGATGGTTAGAGAAGAGAATTGGAAAAGGCAAGAAATGGTTAGGTTGAGTCAAGAACAAGAAAGAATGGCTCAAGAACGGACAATTTCTGCTTCTAGAGATGCTGCCATTATTGCTTTTCTTCAGAAATTTACTGGCCAAACCATTCAATTTTCAGCCCCACAACAACAACAATTTGATGTGCCTGTGCCTGTGCCTGTGCCTGTACCTGTACCTGTATCTGTGCCTGTGTCTGTACCTATGCCTATGCCTGTGCCAGCGCCACTATCTCCTGTTCCCTCTCAGCCATTGCAACCACAAACTCTGCCACAGCTTCAGAATCAGCCGCCTTCAAATACAATCCCAATCCCATTGGATCAGCCAATGTTTCAGGAAATTAGCCAAGGGGGAGATGGATCTTCAGACCCCATTTCTTCAAGATGGCCAAAACAGGAAGTTTTAGCTCTAATAAAACTGAGAGGTGGGCTTGAATCAAGGTATCAAGAAACAGGTCCAAAGGGTCCTCTGTGGGAAGAGATTTCAGCTGGAATGACACGGATGGGTTACAAGAGAAGTTCTAAAAGATGTAAAGAGAAATGGGAGAATATCAATAAGTATTTCAAGAAAGTTAAAGAAAGCAACAAAAAACGCCGTGAGGATTCTAAAACCTGCCCTTATTTCAATGAACTTGATGCTCTTTACCGCAAAAAAATCCTTCCTGCTTCTGCTTCTGATTCTGGTTCCTTTAGTGATACCAATAAATTTGAACAAAACCAAACAACAGACCTTCAACCTCAACCCCATTCTTCCATTCCTCAAGGCTTATCCGCTACTCTTTTTGGTGAAGGAACTGAAGAACAACCAACATCCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTTCAGGATGACCTTTATCGACGTCATGTCGATCAAGACGACGACGAAAACGACGATTATTGCAGTGATGATGACGATGATGATGATGATTTACCAGAAGAAAAGAGAAACAGTAACATTGATTATAAAATAGAGTTTCAAAGAAGAAACAAGGTAGGAAACTCCAATGGCGTTGCGAGTGAGTTTCAATCAATGGCGGTGGTTCAATAG 2106 44.68 MEGAAGGSGSGLGLPDRSQLFGGVSTPPPPLTVDATISDSQQVEAASPISSRPPAVPSSLNYEELIRLSGGSGGQMVVDDEEGDRSGGGSGGNRWPRQETLALLKIRSEMDSAFRDATLKGPLWDEVSRKLGEMGYKRNAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNANVAPSSSSFTLPQPTNVAFGISNPTPISSVKISSSSSQTPMGIFSSPPDHFTVRPPPTVAAPMGVSFSSNTSSASTEDDDNDEDEEMRFDVDLEGLPENVAGSSRKRRRGVVKGNESRTHKMMMEFFEGLMKQVIEKQEVMQQKFLEAIEKREQDRMVREENWKRQEMVRLSQEQERMAQERTISASRDAAIIAFLQKFTGQTIQFSAPQQQQFDVPVPVPVPVPVPVSVPVSVPMPMPVPAPLSPVPSQPLQPQTLPQLQNQPPSNTIPIPLDQPMFQEISQGGDGSSDPISSRWPKQEVLALIKLRGGLESRYQETGPKGPLWEEISAGMTRMGYKRSSKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILPASASDSGSFSDTNKFEQNQTTDLQPQPHSSIPQGLSATLFGEGTEEQPTSTKPEDIVNELMELQDDLYRRHVDQDDDENDDYCSDDDDDDDDLPEEKRNSNIDYKIEFQRRNKVGNSNGVASEFQSMAVVQ 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 941739 945173 + Lsi09G001040.1 Lsi09g00104 669717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00104 701 MobiDBLite consensus disorder prediction 572 606 - -
Lsi09g00104 701 MobiDBLite consensus disorder prediction 665 680 - -
Lsi09g00104 701 MobiDBLite consensus disorder prediction 258 272 - -
Lsi09g00104 701 ProSiteProfiles Myb-like domain profile. 470 534 IPR001005 -
Lsi09g00104 701 PANTHER - 38 577 - -
Lsi09g00104 701 MobiDBLite consensus disorder prediction 31 57 - -
Lsi09g00104 701 CDD GT1 93 158 - -
Lsi09g00104 701 Pfam Myb/SANT-like DNA-binding domain 476 563 IPR044822 -
Lsi09g00104 701 Pfam Myb/SANT-like DNA-binding domain 93 179 IPR044822 -
Lsi09g00104 701 MobiDBLite consensus disorder prediction 1 97 - -
Lsi09g00104 701 SMART sant 474 536 IPR001005 -
Lsi09g00104 701 SMART sant 91 153 IPR001005 -
Lsi09g00104 701 MobiDBLite consensus disorder prediction 648 664 - -
Lsi09g00104 701 CDD GT1 476 541 - -
Lsi09g00104 701 MobiDBLite consensus disorder prediction 641 701 - -
Lsi09g00104 701 Gene3D - 478 539 - -
Lsi09g00104 701 Gene3D - 95 156 - -
Lsi09g00104 701 MobiDBLite consensus disorder prediction 245 272 - -
Lsi09g00104 701 MobiDBLite consensus disorder prediction 573 606 - -
Lsi09g00104 701 MobiDBLite consensus disorder prediction 681 701 - -
Lsi09g00104 701 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 38 577 - -
Lsi09g00104 701 ProSiteProfiles Myb-like domain profile. 93 151 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00104 - - - csv:101212243 978.008
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00132 Lsi-Chr4:1531113 Lsi09g00104 Lsi-Chr9:941739 2.11E-08 dispersed
Lsi06g00804 Lsi-Chr6:16812803 Lsi09g00104 Lsi-Chr9:941739 3.20E-07 dispersed
Lsi06g01633 Lsi-Chr6:26632587 Lsi09g00104 Lsi-Chr9:941739 7.77E-08 dispersed
Lsi09g00104 Lsi-Chr9:941739 Lsi10g00706 Lsi-Chr10:9874458 4.17E-19 dispersed
Lsi09g00104 Lsi-Chr9:941739 Lsi03g02220 Lsi-Chr3:33225176 2.80E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25855 PF13837 Myb_DNA-bind_4 2.00E-22 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00104 Lsi_Chr09 FPKM 42.1469 41.72065 37.533936 36.794445 31.956551 32.662369 34.558071 41.639141 42.139061 46.018284