Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00106 ATGGCAAAAGATTATAGTGGCTCACCGAAGCATCACCATCTCGAGTCAAGAAGGAAGCGGTTGACATGGATTCTTGCCGTCAGTGGACTATGCATTTTATCATACATGTTGGGGGCATGGCAAAGCACCACGACGCCGATCAACCAATCCGAAGCATACTCCAAAGTCGGTTGCGCCGATCAAACATTCCCATCCACCAACACCCAATCCTCATCACCGACGCGTTTGCTCGACTTCGAGAGCCACCACGGCGTCGAAATCAACAACACCATAGAAGCAGTCACCAAGACGATCTCTCCCTGCGACATGTCGTATAGCGAATACACTCCCTGTCAAGATCCGACTAGGGCAAGGAAATTCGATCGGAGTATGTTGAAATACAGAGAACGCCATTGCCCTGCTAAGGAAGAACTACTCCTCTGTATGATTCCGGCACCACCGAAGTACAAAACGCCGTTCAAGTGGCCGCAGAGCCGTGATTATGCTTGGTACGATAACATTCCTCATAGAGAGCTTAGCATCGAGAAAGCGGTACAGAATTGGATTCAGGTTGAAGGCGATCGTTTCCGATTTCCCGGCGGCGGCACGATGTTCCCCCGCGGTGCCGATGCTTACATTGACGACATTAACGAACTGATTCCTCTTACTAAAGGAAAGATTCGAACCGCCATTGATACGGGCTGTGGGGTAGCAAGTTGGGGTGCTTATTTGTTGAAGAGGGACATCTTGGCCATGTCCTTTGCCCCAAGGGATACTCATGAAGCTCAAGTTCAGTTTGCCCTAGAGCGTGGAGTTCCAGCCATGATTGGGATCATGGCCTCTCAAAGACTCCCTTACCCGGCTCGGGCTTTCGACATGGCTCATTGCTCCCGTTGTTTGATCCCTTGGGCTAAAGATGGTGGGTTGTACTTAATCGAACTTGATAGAGTTTTGAGACCCGGTGGCTATTGGATTCTCTCCGGCCCTCCCATTCGTTGGAAGAAGTATTGGAGAGGTTGGGAAAGAACACAAGAGGACTTGAAAGAAGAGCAAGACTCCATTGAAGAAGTTGCAAGGAGATTATGCTGGAAGAAAGTGATGGAGAAGAATGATCTTGCAATATGGCAGAAGCCCCTCAACCACATCCAATGCATCAAGAACAAGAAAGTCTACAAAACACCCCACATTTGCAAATCAGACAATCCTGATGGTGCTTGGTATCCCAGGTATCGTAACATGGAGACATGCATTACTCCATTACCAGAAGTCAGCAGCTCCGACGAAGTTGCCGGTGGTGCAGTGGAGAATTGGCCAGAGCGTGCATTCGTCGTACCACCTCGAATCAGTAGAGGAACAATACCTAGCATCACCGCAGAAAATTTCGTAGAAGATAACAAACTATGGAGGGAGAGGATTACTTATTACAAAAAGATGATTCCCTTAACGCAAGGACGGTATCGAAACATAATGGATATGAACGCAAAACTTGGCGGATTCGCAGCCGCTTTGTTGAAATTTCCAGTGTGGGTTATGAACGTCGTGCCCGCGAATTCAGACCGTGACACTTTGGGAGTAATATATGAACGTGGGTTAATTGGAACGTACCAAGATTGGTGCGAGGCGTTCTCGACGTACCCAAGAACATACGACCTAATTCATGCTAATGGCATATTTAGCATATATCAAGATAGGTGTGATATAACACACATTCTATTGGAGATGGATAGGATATTGAGGCCAGAGGGGACAGTAATATTTAGAGATACAGTGGAAGTATTGGTGAAGGTTCAAACAATATCAGATGGAATGAAGTGGAAGAGTCAAATAATGGACCATGAAACAGGGCCATTCAATCCTGAGAAGATTCTTGTGGCAGTTAAAACTTATTGGACTGGTGAAACCAACCAACAACAAGAGAAACAAGCTTAG 1908 46.86 MAKDYSGSPKHHHLESRRKRLTWILAVSGLCILSYMLGAWQSTTTPINQSEAYSKVGCADQTFPSTNTQSSSPTRLLDFESHHGVEINNTIEAVTKTISPCDMSYSEYTPCQDPTRARKFDRSMLKYRERHCPAKEELLLCMIPAPPKYKTPFKWPQSRDYAWYDNIPHRELSIEKAVQNWIQVEGDRFRFPGGGTMFPRGADAYIDDINELIPLTKGKIRTAIDTGCGVASWGAYLLKRDILAMSFAPRDTHEAQVQFALERGVPAMIGIMASQRLPYPARAFDMAHCSRCLIPWAKDGGLYLIELDRVLRPGGYWILSGPPIRWKKYWRGWERTQEDLKEEQDSIEEVARRLCWKKVMEKNDLAIWQKPLNHIQCIKNKKVYKTPHICKSDNPDGAWYPRYRNMETCITPLPEVSSSDEVAGGAVENWPERAFVVPPRISRGTIPSITAENFVEDNKLWRERITYYKKMIPLTQGRYRNIMDMNAKLGGFAAALLKFPVWVMNVVPANSDRDTLGVIYERGLIGTYQDWCEAFSTYPRTYDLIHANGIFSIYQDRCDITHILLEMDRILRPEGTVIFRDTVEVLVKVQTISDGMKWKSQIMDHETGPFNPEKILVAVKTYWTGETNQQQEKQA 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 969271 973611 - Lsi09G001060.1 Lsi09g00106 669719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00106 635 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 342 IPR029063 -
Lsi09g00106 635 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 467 582 IPR029063 -
Lsi09g00106 635 Coils Coil 333 353 - -
Lsi09g00106 635 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 13 626 IPR004159 GO:0008168
Lsi09g00106 635 PANTHER METHYLTRANSFERASE PMT18-RELATED 13 626 - -
Lsi09g00106 635 Gene3D Vaccinia Virus protein VP39 195 380 IPR029063 -
Lsi09g00106 635 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 107 620 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00106 - - - csv:101211919 1251.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01255 Lsi-Chr5:20318940 Lsi09g00106 Lsi-Chr9:969271 0 dispersed
Lsi05g02009 Lsi-Chr5:27143007 Lsi09g00106 Lsi-Chr9:969271 3.66E-167 dispersed
Lsi09g00106 Lsi-Chr9:969271 Lsi11g00982 Lsi-Chr11:16114297 0 dispersed
Lsi09g00106 Lsi-Chr9:969271 Lsi05g02006 Lsi-Chr5:27120598 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g294 . . . . . . Bma07g01053 . . Cmo16g01132 Cma02g00967 Cma15g01345 Car02g00713 Car15g01212 . . Cpe05g00750 . . . . . . . . . . . . . . . . . . . Csa05g00134 Chy09g01360 . Blo03g00783 Blo19g00119 Bda07g00168 Bda09g00622 Bpe08g00920 Bpe11g00386 . . . Cmo02g00973 Cmo15g01407 . . . . . . Bhi12g00051 . . Lac11g1820 . . Lcy12g1457 Cla01g00118 Cam01g0120 Cec01g0120 Cco01g0121 Clacu01g0117 Cmu01g0118 Cre09g2387 Lsi09g00106 . . Cme09g01906
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004844 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00106 Lsi_Chr09 FPKM 0.851485 1.690718 1.041733 1.221037 3.665267 3.135074 3.996793 0.0 0.0 0.180364