Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00107 ATGGCGACGTCGTCATCGTCCTCAGCATCTTCACTAAGGTCGTGGAGGACGGCGTTTCTGACTCTGAGAGACGAATCGATCTCTTCTTCAACTTCAATTTCCCAACTTCTCTACGACACCATCTTCTCGCACTCCGATTCCTTAATCGCTGCCGCGCGCTACCTTCCTCCACCAGAAGTTTCATCAGATCTGCTGTTTCTCTTAGAAGTGGCTACTTCTGCTTCCGACTCCGTGCAAGACATTGTGCTTATCTTCGCAGATATCATACATCTGATCCACGGTATTTCTTATGAAGTTGCTCTTGAATTTAGTTCTTCCTCTTGGAACCTGCTCCTTCGATATTTTGGAGATGTAATCCAAATCCTACTTGGAAAGCTTAATATTCCAGGAAATTATGCTCTAATCAGGCCTGTCTTGGAATCTTTGGAGATTGTAAGGTTAGCTTCCCTTTTCTCCTCCGTTAGCTTGGGGAGATACTACTCTTTCTTGCTGCTACTTCTGCACACTGGGTCAGTATTTTTGTCATTTGGACCTAAAGTGATGTTTGCTCATCTGAGTGAATTTGTTGAATCTGATGAGATATGTATAGTAATAGTAGCTAGACACGTTGTCTGTTTACAACAGCGCAAATTTTTACCAGCAGAAGATATTCAGCTCTCAAAGTTCTTGCTTTCTGTGATTGCTGGCTCTCAATCGGCAATATTCCCCTCGTCAAATTCAATCATTAGACATGGTTGTACTGCTGAAGTTGTGAAAAGTGTGCCCAAATGTAATAGTTTATGGGATGTTCAGGCTGTAGCCTTTGATCTACTTAGTCAGACCGTCACAAGTCTGGGGTCATATTTTCCAGTCGATGTTTGGAAGTCAACAATTCAGGTTATTCGAAAATTGATGGATTTCTTGGCATCTACTAGCTTACTTGTTGAAGACAAGGTGATGTCCAGAGGAAAGCTTCCTGGTGTAGATCAAGTGAATGAGTTACCTGATCTTAGGCTTGCTGTCCTAATTTATCTCAACAAGCTTCCTCCATTTTTGTGGAGTCTTAGCCAAGGAAGGGACTATCAATTTTCTTGTTGGTATGAAAAACTGGTGTCAGCTTTTGTAGCAGCATTGCGCATGTTCTTTGCCTATGGATTTTCTAATAGACCCCTGCTTGCTTGTTCAATTGGTAATCAAGGGAAAGAACCTAGTTTGACTAGTACCAAGTCCAGTTTGGAGGAACCGAAAAAGGAAAATCATAGTGCATATAGGCCCCCACACATGCGTAGAAGAGAAAATTTAAATAAGAAGCAGGCCAGTGTTCAAAATTCTCAAAGTTCAATGGCTGCAGAGTCTCTTAACTGTGATTTGATATCTTCAGATTCCGATCATGACAGTGATGGGCCAGGCAGAGATGCTGACATCATTCAGAATGGCAAGGTTCGGGTTGCTGCTATTCTTTGTATACAGGATCTTTGCCAAGCTGACCCCAAAGCATTCACCAGCCAATGGACACTTCTTTTGCCAACTCGGGATGTTCTGCTGCCAAGGAAATTTGATGCAACTTTGATGACATGTCTTCTATTTGATCCTTCTCTAAAGGCCCAGATAGCATCTGCTGCAGCCCTGGTGGTTATGTTGGATAGGACTACTTCCATTTCCTTGCAGATTGCAGAATACAGAGATCCAGCTAAATGTGGATCCTTTATGCCTCTTTCGATTTCCCTTGGGCAGATACTAATGCAACTCCATATAGGTGTTCTGTACTTGATCCAACGTTCAACTCATGGTAGATTGCTGACAATCTTGTTCAAGATTCTTTTGCATCTGATATCATCAACTCCATATCCAAGGATGCCTGAAGAGTTGTTGCCGAACATGGTAAAAGCTTTACAAGCAACAATTGAAGAGGGCTTTCCATTCAAAAGTGATCAAACTGACTTGCTGGCTGCTGCTATCAGTTGCTTAAATGTAGCCTTATCTACTTCTCAGTCATCACCTCATGTGAAGGAGATGCTTTCCAAACAAATATCCACAGCTCAAAAGGGAAACAGTGTTCTTGTCATATTACTTCAATATTCTGAGCAACTAACCAACCCAACCATATGCATTGAGGCTCTTCAGGCCTTAAAAGCTGTATCACACAACTATCCACATATCATGTTTGCTTTCTGGGAACAAGTTTCTTCAGTTGTTTCTAACTTTCTACATGAAGCTGCTCCTGAAGTTTCTACGGGGCAGTGGAGGGTGCAGTCTAGAAACAATGTTGGAATTATTGGAGAAAAAGTTATAACAGCCGCTGTTAAGGTTTTGGATGAATGTCTTCGAGCAATATCTGGGTTCAAGGGCACGGAGGATCTTTTGGATGATAACCTACTTGATTCTCCATTTACTTCGGACTGCATAAGAATGAAGAAGGTCTCGTCAGCTCCATCATATGAATTAAAGAATTTAGATGAAACTATTGACAGTCCAGAGGAGGTATGTGCAGGAATGAAGCAGTGGTGTGAGGTGAATGCTGCAGTGTATGATGAGGTGCCTTCAGTGAGGTCAGCTGCTTGTCGTGCCATTGGTGTCATATCATGTTTCCCTCAAGTTTCCCAAAGTGCAGAGATTCTTGACAAGTTCATCCATGCTGTTGAGATCAATACTTGTGATTCTTTGGTTTCGGTAAGGGTAACAGCCTCTTGGGCATTGGCAAATATATGTGAGTCAATCCGGCGCTTTTTTGATGATTTTCCTTCGAGACAGCCCACAGATTCAATAGAACGTTCTCATATATTGACACTATTAATTGAGAGCAGTTTGCGTCTAGCAAATGATGGAGACAAGATTAAATCAAATGCTGTCAGAGCTCTTGGAAATCTTTCAAGGTTGATAAAGTTTTCATGTTTAATTGAGAGGCCTGGAAGCAATTCAATTGTTGTTAATAACTCTGAGGATCTCTCGTCAAAGGGTGATTCAAAAGTACATCCTGGGTGCCCATCAAAAAATCTCAATGATACAATTTCGTTCTACAATTCGAGTTTTCTTGAGAGAATAGTTCAGGCATTTATTTCTGGGATCACAACTGGAAATGTGAAGGTTCAGTGGAATGTTTGTCATGCATTAAGCAACTTATTTTTAAATAAAACATTGAGACTGCAGGACATGGACAGGGTGTCATCACTTTTCAATATTCTTTTGCTGCTATTGCGTGATTCCTCTAATTTTAAGGTGAGGATACAAGCTGCTGCTGCTTTATCTGTGCCAGCTTCAGTGTATGGTAAGTACCAGGTAGTCACTGACTCACTATCAGCTAGTCTGGGAACGGGAGCTGGGCTGGGTGCTAGTAAGGAGAAACTGTGTCGTTGCTATGGGAAGTCTTTTCCAGATGTAGTCCAAGGTCTGGAGCACACAATTGAGAACCTAGAATCAAATCATATTCTTGCTCCAAGTTTCAAGTATAAGGTTGCACTTGAGAAGCAGCTGACTTCAACCATGTTACATGTTTTAAGTCTTGCTGCCAGCACTGATTATCAACCCCTGAAAGATTTTCTGGTCAAAAAAGCAACATTTCTTGAGGAATGGTTCAAGGCACTTTGTTCATCGGTTGGAGAGAGAAGTAATTGGCGTGGTGATGGTGAAGACAATTCCACCAACAACCAGAAGAGAGAAATGATATCGAAAGCTTTACGGTCACTAATTGATGTGTATACGAGCAGCAATAATAGTGCAATTTCTCAGAGATTTGAAGACTTGGATAAATTGGTTCACTAG 3738 41.55 MATSSSSSASSLRSWRTAFLTLRDESISSSTSISQLLYDTIFSHSDSLIAAARYLPPPEVSSDLLFLLEVATSASDSVQDIVLIFADIIHLIHGISYEVALEFSSSSWNLLLRYFGDVIQILLGKLNIPGNYALIRPVLESLEIVRLASLFSSVSLGRYYSFLLLLLHTGSVFLSFGPKVMFAHLSEFVESDEICIVIVARHVVCLQQRKFLPAEDIQLSKFLLSVIAGSQSAIFPSSNSIIRHGCTAEVVKSVPKCNSLWDVQAVAFDLLSQTVTSLGSYFPVDVWKSTIQVIRKLMDFLASTSLLVEDKVMSRGKLPGVDQVNELPDLRLAVLIYLNKLPPFLWSLSQGRDYQFSCWYEKLVSAFVAALRMFFAYGFSNRPLLACSIGNQGKEPSLTSTKSSLEEPKKENHSAYRPPHMRRRENLNKKQASVQNSQSSMAAESLNCDLISSDSDHDSDGPGRDADIIQNGKVRVAAILCIQDLCQADPKAFTSQWTLLLPTRDVLLPRKFDATLMTCLLFDPSLKAQIASAAALVVMLDRTTSISLQIAEYRDPAKCGSFMPLSISLGQILMQLHIGVLYLIQRSTHGRLLTILFKILLHLISSTPYPRMPEELLPNMVKALQATIEEGFPFKSDQTDLLAAAISCLNVALSTSQSSPHVKEMLSKQISTAQKGNSVLVILLQYSEQLTNPTICIEALQALKAVSHNYPHIMFAFWEQVSSVVSNFLHEAAPEVSTGQWRVQSRNNVGIIGEKVITAAVKVLDECLRAISGFKGTEDLLDDNLLDSPFTSDCIRMKKVSSAPSYELKNLDETIDSPEEVCAGMKQWCEVNAAVYDEVPSVRSAACRAIGVISCFPQVSQSAEILDKFIHAVEINTCDSLVSVRVTASWALANICESIRRFFDDFPSRQPTDSIERSHILTLLIESSLRLANDGDKIKSNAVRALGNLSRLIKFSCLIERPGSNSIVVNNSEDLSSKGDSKVHPGCPSKNLNDTISFYNSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNKTLRLQDMDRVSSLFNILLLLLRDSSNFKVRIQAAAALSVPASVYGKYQVVTDSLSASLGTGAGLGASKEKLCRCYGKSFPDVVQGLEHTIENLESNHILAPSFKYKVALEKQLTSTMLHVLSLAASTDYQPLKDFLVKKATFLEEWFKALCSSVGERSNWRGDGEDNSTNNQKREMISKALRSLIDVYTSSNNSAISQRFEDLDKLVH 1245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 983403 1015329 - Lsi09G001070.1 Lsi09g00107 669720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00107 1245 Pfam Domain of unknown function (DUF4042) 473 660 IPR025283 -
Lsi09g00107 1245 Gene3D - 811 977 IPR011989 -
Lsi09g00107 1245 Gene3D - 990 1237 IPR011989 -
Lsi09g00107 1245 PANTHER MALARIA ANTIGEN-RELATED 9 1237 - -
Lsi09g00107 1245 MobiDBLite consensus disorder prediction 393 423 - -
Lsi09g00107 1245 Gene3D - 467 787 IPR011989 -
Lsi09g00107 1245 MobiDBLite consensus disorder prediction 404 423 - -
Lsi09g00107 1245 SUPERFAMILY ARM repeat 470 1229 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00107 K24815 HEATR6; HEAT repeat-containing protein 6 - csv:101212003 1838.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0578 . . . . Csa05g00135 . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00119 Cam01g0122 Cec01g0122 Cco01g0123 Clacu01g0118 Cmu01g0120 Cre09g2386 Lsi09g00107 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007418 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00107 Lsi_Chr09 FPKM 7.243243 10.438667 0.357353 1.517062 0.0 0.0 0.0 0.0 0.0 0.0