Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00111 ATGAGCTCTCAGAATTCCGGTGAAGACTGTCTCGGTTGGGCCGCAAGAGACTCCTCTGGGTTTCTATCTCCTTACAAATTCAGTCGTAGGGTTCCTGGAGATGATGATGTTTCAATTACAATAACACACTGCGGAATTTGCTATGCAGATGTAATATGGACAAGAAATAAATTAGGAGATTCAAAATATCCTTTGGTGCCTGGACATGAGATTGCAGGAATTGTGAAAACTGTTGGCTCAAATGTTCAACGATTTAAAGTTGGAGATCATGTTGGAGTAGGAACTTACGTGAATTCTTGCAGACAATGCGAATACTGCTACAAAATACCTGACAATTATCCATTAGCTTCAGCTGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCTCCCATGATTCGGCATAGTATGAATCAACCCGGTAAATCTCTTGGAGTGATTGGGCTTGGTGGTCTCGGCCACTTAGCAGTGAAGTTTGGGAAGGCTTTTGGACTGAAGGTGACAGTTTTTAGCACTAGTATATCCAAGAAAGAAGAAGCCCTAAGCGTTCTTGGAGCAGACAAATTTGTTCTCTCATCTGACAACAAGCAAATGGAGGCCTTGTCCAAGTCCCTCGACTTTATTATCGATGCTGCATCTGGTGATCATCCATTTGATCCATACATGTCTACATTGAAGATTGGTGGCGTTATGGTTCTGGTGGGGTTTCCTTCTCAAGTCAAGTTTAGTCCTGCAAGCCTTAATTTGGGTTTGAGAACCATTTCTGGTAGCGTGACTGGTGGCACTAAAGTGACCCAAGAAATGATCGATTTCTGCGCTGCTCATGGAATCTATCCAAACATAGAAGTGATTCCAATTCAGTACTCTAATGAAGCTATCGAAAGGGTAACAAAGAATGATGTCAAGCACCGATTTGTTATTGATATTGAAGGCTCTCTAAAATGA 945 41.8 MSSQNSGEDCLGWAARDSSGFLSPYKFSRRVPGDDDVSITITHCGICYADVIWTRNKLGDSKYPLVPGHEIAGIVKTVGSNVQRFKVGDHVGVGTYVNSCRQCEYCYKIPDNYPLASAAPLLCAGITVYSPMIRHSMNQPGKSLGVIGLGGLGHLAVKFGKAFGLKVTVFSTSISKKEEALSVLGADKFVLSSDNKQMEALSKSLDFIIDAASGDHPFDPYMSTLKIGGVMVLVGFPSQVKFSPASLNLGLRTISGSVTGGTKVTQEMIDFCAAHGIYPNIEVIPIQYSNEAIERVTKNDVKHRFVIDIEGSLK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1051318 1055810 + Lsi09G001110.1 Lsi09g00111 669724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00111 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 114 277 IPR036291 -
Lsi09g00111 314 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Lsi09g00111 314 Gene3D - 107 308 - -
Lsi09g00111 314 SUPERFAMILY GroES-like 17 142 IPR011032 -
Lsi09g00111 314 Pfam Zinc-binding dehydrogenase 151 273 IPR013149 -
Lsi09g00111 314 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 144 171 IPR029752 -
Lsi09g00111 314 Gene3D - 124 279 - -
Lsi09g00111 314 Gene3D - 13 106 - -
Lsi09g00111 314 PANTHER - 105 313 - -
Lsi09g00111 314 PANTHER - 2 106 - -
Lsi09g00111 314 PANTHER ALDEHYDE REDUCTASE 105 313 - -
Lsi09g00111 314 PANTHER ALDEHYDE REDUCTASE 2 106 - -
Lsi09g00111 314 CDD CAD1 12 308 - -
Lsi09g00111 314 Pfam Alcohol dehydrogenase GroES-like domain 35 108 IPR013154 -
Lsi09g00111 314 SMART PKS_ER_names_mod 14 307 IPR020843 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00111 Lsi-Chr9:1051318 Lsi10g00699 Lsi-Chr10:9771521 2.98E-102 dispersed
Lsi09g00111 Lsi-Chr9:1051318 Lsi03g00532 Lsi-Chr3:6272532 2.03E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00111 K00083 - csv:101211438 573.933