Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00114 ATGAATTTTGGAGTGAATAGACTCCAAAATCACCATCTAGAACCTAGAAATAGGTTGGATTTGATCATGATGGACCCACCGGAGCCGGAGGAGGAAGCTGGCGGTGGTTCTAATAGCAGCGGCGGTGGAAGAGGAGGAGAAGTTGAAAGAGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGCAAATTAAATCGTCTTGTAATTCCAAAGCAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGTAACGGAAAATCATGGAGATTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTCATGACTAAAGGCTGGAGTCGCTTCGTCAAAGAAAAACGCCTCGACGCCGGTGATATCGTTTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGTCGCCCTGAACTCCCCATCCACCACCACCACCACCACTACCCCACCACCACCGCCCTCCGACCTAGCATCGTCGTCCCTGGCGGCGGTGCTACAGCTTGGGGGCCATTAGTCTGGCAGCCACTCGGCGCAACAACAGCTGGATACCATCATCAGCCAGCTGCCGTAGCGCCGCGGGACCACACACACTTGTCGCGAATAAACAACAACAACAATGTGAATGGTATGTGTTGTCCGTACGGATATGGGAGTGTTGAAACAACAACTTCTGGGTTGGTGTATTTGAGGACAGAATTAGAAGGAAGATCAAGAAGGGCAGCTCCAAGATTAGGGGAAGATCAAGAATTGGAGTTGGAAATGGAAGGGAATAATAATATCAATAACAATAATAATTATTATTATCAGATGCAGCAAGAGTATTGTAGTAATGGTGAGGGTGCTTCAATGGTGGTCCTTCAAGGAAATTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAACAGTGATCAAGAAGATACACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTTCAAACCCCAAATCCACTACTACTACTACTACTACCACTCAATTCCAATTGCCTTCTCCTTCAATTTACAAGTAA 1170 43.93 MNFGVNRLQNHHLEPRNRLDLIMMDPPEPEEEAGGGSNSSGGGRGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHYPTTTALRPSIVVPGGGATAWGPLVWQPLGATTAGYHHQPAAVAPRDHTHLSRINNNNNVNGMCCPYGYGSVETTTSGLVYLRTELEGRSRRAAPRLGEDQELELEMEGNNNINNNNNYYYQMQQEYCSNGEGASMVVLQGNCMEDHKLKTTNNNNNSDQEDTPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSSNPKSTTTTTTTTQFQLPSPSIYK 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1086117 1087286 + Lsi09G001140.1 Lsi09g00114 669727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00114 389 Gene3D - 48 170 IPR015300 -
Lsi09g00114 389 ProSiteProfiles B3 DNA-binding domain profile. 54 159 IPR003340 GO:0003677
Lsi09g00114 389 Pfam B3 DNA binding domain 54 158 IPR003340 GO:0003677
Lsi09g00114 389 SUPERFAMILY DNA-binding pseudobarrel domain 51 160 IPR015300 -
Lsi09g00114 389 SMART B3_2 54 159 IPR003340 GO:0003677
Lsi09g00114 389 MobiDBLite consensus disorder prediction 24 47 - -
Lsi09g00114 389 CDD B3_DNA 52 141 IPR003340 GO:0003677
Lsi09g00114 389 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 39 366 - -
Lsi09g00114 389 MobiDBLite consensus disorder prediction 349 389 - -
Lsi09g00114 389 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 366 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00278 Lsi-Chr7:3012866 Lsi09g00114 Lsi-Chr9:1086117 2.00E-61 dispersed
Lsi09g00114 Lsi-Chr9:1086117 Lsi09g01706 Lsi-Chr9:25589090 3.88E-62 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25857 PF02362 B3 8.20E-29 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00114 - - csv:101211271 551.206