Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00125 ATGGCGGTGGATTCGTACGTTTTGGAGACGGCGGAGGCTCCCACCGCCTACGAGTTAGTGTTTAAAATTTTGATGTTTATTGCTCGTTTGTGGGTGGGGATTATTGTGGGTGTGTTGGTGGGATGGATTTGGAAACCTAAATGGGCGAATTCTGGAAGGGATTTGTTCAATTCTTCCAAGTTGAAGGATAATTTGCCGTCATCTTGCTTTGTGGGATCGATTTCTAGATTGAATTCTTTGAAAATTCAGCTACCCAGATGCTTGAATTTGACGTCAAATTGTGGGGATAAAAAAGAAATTCTAGCTGACTCACCTACCGCTTCCATCTCCAGGCTTGTTGAGGAGAAAGATGGAGGTCCTTCATGGATTCAAATGATGGATCGTTCTACGGCTACCATGAGCTATCAAGCATGGCGGAGAGACCGTGAGACGGGGCCTCCGCAATACCGAAGTCGAACAGTTTTAGAGGATGCAACCCCTCAGATGGTAAGGGACTTCTTTTGGGATGATGAATTCAGAATGAAATGGGATGATATGCTTATAAGTGCTCAAACTTTGGAGGATTGTTCTAACACAGGAACCATGGCTGTCCACTGGGTGCGCAAGTTCCCTTTCTTCTGTAGTGATCGAGAATACATTATCGGTCGAAGAATCTGGGAATCAGGACAGTCGTATTACTGTGTGACAAAGGGCGTACCTTGTTCCTCGATACCTAGACAGAACAAGCCAAAACGCGTTGACCTTTACTATTCAAGCTGGTGCATCCGTGCAGTTGAGTCGAAAAAAGGGAACGGCCAGCTGACTGCGTGTGAGGTGTTATTATTTCACTACGAAGACATGGGTATTCCATGGGAAATTGCAAAGCTAGGAGTCAGGCAGGGGATGTGGGGAGCCGTGAAGAAGATCGATCCTGCTTTACGTGCATATCAAAAGCACAGGGCGACCGAAGCCCCGCTTTCAAACTGTGCTCTGATGGCTAATATCAACACAAAGGTCAGTACTGACTATTTGAGAAGCTCAGAAGATGCATCTGATGATTCCTTAGAGGTCAAAAGCTTGGAAGAGGCCTCTGAAAAACCAGCAGGGAAGAACTTGCCTAAGCTTCTTATGGTCGGTGGAGCAATCGCTCTTGCTTGCAGTCTCGATCATGGGCTCTTAACAAAAGCAGTTGTGTTCGGAGTTGCCCGGAGATTTTCGAACATCGGAAAGAGATGA 1215 46.26 MAVDSYVLETAEAPTAYELVFKILMFIARLWVGIIVGVLVGWIWKPKWANSGRDLFNSSKLKDNLPSSCFVGSISRLNSLKIQLPRCLNLTSNCGDKKEILADSPTASISRLVEEKDGGPSWIQMMDRSTATMSYQAWRRDRETGPPQYRSRTVLEDATPQMVRDFFWDDEFRMKWDDMLISAQTLEDCSNTGTMAVHWVRKFPFFCSDREYIIGRRIWESGQSYYCVTKGVPCSSIPRQNKPKRVDLYYSSWCIRAVESKKGNGQLTACEVLLFHYEDMGIPWEIAKLGVRQGMWGAVKKIDPALRAYQKHRATEAPLSNCALMANINTKVSTDYLRSSEDASDDSLEVKSLEEASEKPAGKNLPKLLMVGGAIALACSLDHGLLTKAVVFGVARRFSNIGKR 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1214501 1218721 + Lsi09G001250.1 Lsi09g00125 669738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00125 404 ProSiteProfiles START domain profile. 120 311 IPR002913 GO:0008289
Lsi09g00125 404 Pfam START domain 119 284 IPR002913 GO:0008289
Lsi09g00125 404 Gene3D - 100 313 IPR023393 -
Lsi09g00125 404 PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN 3 84 - -
Lsi09g00125 404 SUPERFAMILY Bet v1-like 112 310 - -
Lsi09g00125 404 PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN 96 404 - -
Lsi09g00125 404 CDD START_STARD2_7-like 112 309 - -
Lsi09g00125 404 PANTHER PROTEIN CP5, PUTATIVE-RELATED 3 84 - -
Lsi09g00125 404 PANTHER PROTEIN CP5, PUTATIVE-RELATED 96 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00125 - - - csv:101209462 742.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00417 Lsi-Chr5:5276113 Lsi09g00125 Lsi-Chr9:1214501 6.94E-30 dispersed
Lsi05g01676 Lsi-Chr5:24362731 Lsi09g00125 Lsi-Chr9:1214501 9.62E-112 dispersed
Lsi07g00272 Lsi-Chr7:2954485 Lsi09g00125 Lsi-Chr9:1214501 3.44E-177 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g264 . Blo03g00229 . . . . Bma07g01036 Bma14g00095 . . Cma02g00950 Cma15g01328 Car02g00699 Car15g01194 . Cpe14g00512 Cpe05g00764 . . . . . . . Cla07g00787 Cam07g0850 Cec07g0903 Cco07g0885 Clacu07g0825 Cmu07g0828 Cre07g1186 . . . . . Csa05g00152 Chy09g01344 Cme07g01642 Blo03g00796 Blo19g00133 Bda07g00157 Bda09g00631 Bpe08g00909 Bpe11g00376 . . . Cmo02g00958 . . Cma16g00603 . . . . Bhi12g00073 . . Lac11g1892 Hepe06g1425 . Lcy12g1503 Cla01g00135 Cam01g0137 Cec01g0137 Cco01g0139 Clacu01g0133 Cmu01g0135 Cre09g2370 Lsi09g00125 Csa04g00585 Chy07g01226 Cme09g01892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002222 2 3 2 3 2 2 3 2 2 2 2 2 3 2 2 1 2 2 2 2 2 2 2 2 2 2 2 3 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00125 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.63375 0.748008 0.705573 0.618057 1.263617 0.885086 0.451612