Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00131 ATGACCGTTCCTGCTTCCGATTTTATGATGGAAAACGGCGGATCAAGCTGCCTCCCACTCCCCCCAGATGTCGAGAATCGGATCGTCTCCGACCTGGCGAACCAATCCGAGTCTAATTTGAAAGAAGGCAATCTCTACTATGTTGTTTCTAATCGGTGGTTTAGAAGATGGCAATTATATGTCGGACTGCCTACTGAAGAATTTTCTAGCAAAGATCATTCCTCTGATTCCCAACACTGTAATATGGTTCCTTCGAACGTGATTGAAAGACCCGGTCCTATTGATAATTCAGATATAATCATTAATGGAAGTGATTCTTCTGAGAACAATGATTTAGAGCTAAGAAGTTTTTTGGAGGAACGACGGGATTATGTTTTGGTTCCCAGTGAAGTGTGGGAAAAACTTCATGATTGGTACAAAGGGGGGCCACCGTTACCAAGAAAGATGATATCTCAAGGTGTCAATCAAAAGAATTTTTCTGTGGAGGTTTATCTACTTTGTCTAAAATTGATCGACGCCAGAGATGGAAGTGAATGTACCATACGATTGAGCAAGAAGGCCACCATATTTGATCTCCGTGAGAAGGTGTTTGCACTTAAAGGAATAAATCAAGAAAAGCAGGCGTGTATATGGGACTACTTCAACCAGCAGAAACAATCAATATTGGATTGGACAAGCCAAACCCTCGAAGAACTAAACTTGCAGATGGATCAACATATCCTCCTTGAAGTTGATGGACCTACTCCTCAGACTGGCATGGATGCCACTCGAAATGAGTTAGCTTTGGTAGCTCTTGAACCTTCAAGGTCACCTCTGTCAATTGCAGGGGGGCCAGTGATGTCAAATGGGCATTCATCCGGTTATGGTTATCAGGGAAGTTCTTTAAGCACATCAGTTTCTGACATGGATGATAGAAATGATCTTAGTAGTACTGCTAAAAAAAGAGAGAAGGGTGGTTTGGCAGGGTTGCAGAATTTAGGAAATACATGTTTCATGAATAGTGCCCTTCAATGTTTAGTTCACACGCCACCCCTTGTCGAGTATTTTTTACAAGATTATTCTGAAGAGATCAATGCAGAGAATCCTTTGGGAATGCACGGAGAATTAGCCCTTGCTTTTGGGGAATTGTTGAGGAAATTATGGTCAGGACAAACCACAATTGCACCACGTGTATTCAAGGGAAAGTTAGCTCGGTTTGCTCCTCAGTTCAGTGGTTATAACCAGCATGATTCCCAAGTTAATTTGAATCGTGTTAAACGGAAGCCTTATTTTGAAACAAAGGATTCTGATGGTCGTCCAGATGCAGAAGTTGCAGATGAGTGTTGGAGATACCATAAAGCACGAAATGATTCTTTAATTGTGGATGTTTGTCAAGGTCAATATAAGTCAACATTGGTTTGTCCAGTTTGTGGAAAAATCTCAATTACTTTTGATCCATTTATGTATTTATCATTGCCGCTACCTTCAACTGTCACTCGCAGTGTGACAGTGACTGTGTTCTATGGTGACGGTAGTGGTCTTCCAATGCCATATACTGTGACAGTGCAAAGACATGGGTGCACCAAAGATCTCACCCAGGCATTGGCTGCTGCATGCTGCTTGAAGAGTGATGAAAATCTTCTGCTTGCAGAGGTTTATGATAACCGTATTTACCGATTTTTGGATAACCCTCTTGAATCTTTGACTTCAATTAAAGATGAAGAGTATCTAGTTGCCTATCGCCTTCCGAAAAGGGAGTCTGGAAGACCAAAGCTAGAGATCATTCACAGATCACTAGAAAAATGCTCCATGGACCGGGTGAAGGGAATGGAAAGAAAGCTTTTTGGAACTCCTCTAGTCACATATTTGGCAGAAGACTTCCATAGTGGAGCCGACATAAATGCAGCTGTGTCTAAGATCCTATTGCCCTTGAGGAGAACATACTCTTCAACTAAAGCTCATGGTAGCAAAGAAAATGGCTTTGTTTCTGAAATGAATGATGAGCCAGCGAACTGCAGTCCTCAGTCTGTTTCTAGGAGCCAGGCAATTGACATTGAAGTAGAGGAAGCATCTGAAAAAGAGTCATCCTTTCAACTTCTTTTAACTGACGATAGGGGTTTGAGCTGCAAGCCAATTGACAAGGATTCTGCTATAAAATATGGTCCACTTATAAAGGTTTTCTTAGATTGGAACGACAGAGAACATGAATTATATGATGTGAGCTACATCAAGGATCTTCCTCCTGTTCACCAGACAAGGTTCATGAAGAAAACACGGCAGGAAGCAATCTCTTTATTTTCTTGCTTGGAAGCATTCCTGACTGAAGAACCTTTAGGTCCTGATGATATGTGGTACTGCCCTAGGTGCAAGGAGCATCGACAAGCTACAAAGAAGCTAGACTTGTGGAAGTTGCCAGAGATTATTGTTTTTCACTTGAAGCGTTTTTCATACAGCAGATACCTTAAAAACAAACTTGATACCTTTGTTGATTTCCCCATCCACAATCTTGATTTGAGCAAATATGTCAAAAGCAATGATGGTAAATCTTACTTGTACAACCTATATGCAATTAGCAACCATTATGGTGGTCTTGGCGGTGGGCACTACACTGCATACGCAAAGTTAATCGATGAGAAGAGATGGTACCACTTCGATGACAGCCATGTTTCCCCGGTTGGCGAAGAAGAGATCAAGACCTCAGCTGCTTATTTGTTGTTCTATCAAAGAGTCGAAATTTGA 2718 41.54 MTVPASDFMMENGGSSCLPLPPDVENRIVSDLANQSESNLKEGNLYYVVSNRWFRRWQLYVGLPTEEFSSKDHSSDSQHCNMVPSNVIERPGPIDNSDIIINGSDSSENNDLELRSFLEERRDYVLVPSEVWEKLHDWYKGGPPLPRKMISQGVNQKNFSVEVYLLCLKLIDARDGSECTIRLSKKATIFDLREKVFALKGINQEKQACIWDYFNQQKQSILDWTSQTLEELNLQMDQHILLEVDGPTPQTGMDATRNELALVALEPSRSPLSIAGGPVMSNGHSSGYGYQGSSLSTSVSDMDDRNDLSSTAKKREKGGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLQDYSEEINAENPLGMHGELALAFGELLRKLWSGQTTIAPRVFKGKLARFAPQFSGYNQHDSQVNLNRVKRKPYFETKDSDGRPDAEVADECWRYHKARNDSLIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRSVTVTVFYGDGSGLPMPYTVTVQRHGCTKDLTQALAAACCLKSDENLLLAEVYDNRIYRFLDNPLESLTSIKDEEYLVAYRLPKRESGRPKLEIIHRSLEKCSMDRVKGMERKLFGTPLVTYLAEDFHSGADINAAVSKILLPLRRTYSSTKAHGSKENGFVSEMNDEPANCSPQSVSRSQAIDIEVEEASEKESSFQLLLTDDRGLSCKPIDKDSAIKYGPLIKVFLDWNDREHELYDVSYIKDLPPVHQTRFMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEIIVFHLKRFSYSRYLKNKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHYGGLGGGHYTAYAKLIDEKRWYHFDDSHVSPVGEEEIKTSAAYLLFYQRVEI 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1258203 1267925 - Lsi09G001310.1 Lsi09g00131 669744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00131 905 Gene3D Cysteine proteinases 304 527 - -
Lsi09g00131 905 Gene3D - 9 163 IPR035927 -
Lsi09g00131 905 CDD Peptidase_C19R 748 901 - -
Lsi09g00131 905 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 845 862 IPR018200 GO:0004843|GO:0006511
Lsi09g00131 905 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 322 337 IPR018200 GO:0004843|GO:0006511
Lsi09g00131 905 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 904 - -
Lsi09g00131 905 Gene3D - 164 249 - -
Lsi09g00131 905 Pfam Ubiquitin carboxyl-terminal hydrolase 322 900 IPR001394 GO:0004843|GO:0016579
Lsi09g00131 905 SUPERFAMILY DUSP-like 20 150 IPR035927 -
Lsi09g00131 905 Pfam DUSP domain 44 150 IPR006615 GO:0004843
Lsi09g00131 905 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 321 903 IPR028889 -
Lsi09g00131 905 MobiDBLite consensus disorder prediction 646 670 - -
Lsi09g00131 905 ProSiteProfiles DUSP domain profile. 20 150 IPR006615 GO:0004843
Lsi09g00131 905 SUPERFAMILY Cysteine proteinases 319 903 IPR038765 -
Lsi09g00131 905 MobiDBLite consensus disorder prediction 295 315 - -
Lsi09g00131 905 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 16 904 - -
Lsi09g00131 905 SMART dusp 39 153 IPR006615 GO:0004843
Lsi09g00131 905 Gene3D Cysteine proteinases 642 905 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00131 - - - csv:101208487 1689.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01440 Lsi-Chr2:20051189 Lsi09g00131 Lsi-Chr9:1258203 0 dispersed
Lsi03g01802 Lsi-Chr3:29426251 Lsi09g00131 Lsi-Chr9:1258203 0 dispersed
Lsi09g00131 Lsi-Chr9:1258203 Lsi04g01366 Lsi-Chr4:21441899 8.20E-20 dispersed
Lsi09g00131 Lsi-Chr9:1258203 Lsi10g01129 Lsi-Chr10:15558601 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00131 Lsi_Chr09 FPKM 2.784534 4.73455 0.0 0.0 1.823908 2.287783 2.273903 0.0 0.0 0.0