Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00136 ATGAATGGTTTTTGTTTCACAACCTTTGTGTTCGGAGATTCGCTTGTGGATGCGGGGAACAACGACTATATTTTTACCCTCTCCAAAGCTGATTCACCGCCATATGGTATCGATTTCGAGCCCTCTGGTGGCCAGCCCACCGGAAGGTTCACCAACGGTCGAACTATTTCAGATATTATCGGGGAATATCTTGGAGCCAAATCATTTCCTCCACCATTTCTAGCTCCAAGTACACAAGAAGACACAATATATAAAGGAATAAACTATGCTTCTGGAGCTTCTGGCATCTTGGATGAAACTGATCAAGTTGCTATCAAAAACGTGTTTGTTTTGAAAGCATTAGAAAATCTCACCTACAGCCAAGGACACCCTCCACCACCAAATAATGGTCAAGGACAAAAGCGATTGCACGAGTTGGGAGCGCGAAAATTTGTAGTGGTTGGAGTTGGACCACTAGGATGCATTCCGTTTGTACGAGCAGTACATTTTGTAACAAATGAAAAATGTTCAGAAGAAGTGAATCGATTGATTGAAGCCTACAATTTTAGGCTAAGTGGAGTGGTTGATCAATTGAATCTAGAGTTTGGTTCCAAAACCATGTTCGTTTATGCTAATTCATATGCTGTCTTCATGAAGATTATTGTCAATTATCGACAATATGGTTAG 666 40.99 MNGFCFTTFVFGDSLVDAGNNDYIFTLSKADSPPYGIDFEPSGGQPTGRFTNGRTISDIIGEYLGAKSFPPPFLAPSTQEDTIYKGINYASGASGILDETDQVAIKNVFVLKALENLTYSQGHPPPPNNGQGQKRLHELGARKFVVVGVGPLGCIPFVRAVHFVTNEKCSEEVNRLIEAYNFRLSGVVDQLNLEFGSKTMFVYANSYAVFMKIIVNYRQYG 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1368793 1378568 + Lsi09G001360.1 Lsi09g00136 669749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00136 221 Pfam GDSL-like Lipase/Acylhydrolase 9 98 IPR001087 GO:0016788
Lsi09g00136 221 Pfam GDSL-like Lipase/Acylhydrolase 134 206 IPR001087 GO:0016788
Lsi09g00136 221 Gene3D SGNH hydrolase 7 124 IPR036514 -
Lsi09g00136 221 Gene3D SGNH hydrolase 128 221 IPR036514 -
Lsi09g00136 221 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 133 221 - -
Lsi09g00136 221 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 5 117 - -
Lsi09g00136 221 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 133 221 - -
Lsi09g00136 221 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 5 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00136 - - - csv:101206776 328.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00136 Lsi-Chr9:1368793 Lsi10g00628 Lsi-Chr10:8767925 8.29E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00163 Chy09g01334 . Blo03g00801 . . . . Bpe11g00371 . . . . . . . . . . . Bhi12g00084 . . . . . Lcy12g1518 Cla01g00145 Cam01g0150 Cec01g0146 Cco01g0152 Clacu01g0145 Cmu01g0145 Cre09g2361 Lsi09g00136 . . Cme09g01882
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013076 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00136 Lsi_Chr09 FPKM 0.0 0.0 0.138123 0.0 0.0 0.0 0.0 0.0 0.117016 0.095519