Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00137 ATGTTGGCAATATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATGGCCAAATCAGCCAAATGGGTTTTGAAATCAATTGGCCATTTCACAAATGAAATTCTAAGCATTTTTCTCTTCTCTCTTCTTGATATCATTGACATTGTGTTATGTTTTGTTTACAAAATGGCTGATTTCTTCTTTGAATCTCAATGGAAGCCTTGTTATTGTTCTTCCCATAAAGAAGCTATTACAAGTAGTGATGGGAATAAGGTTTTGGTCTCTCAAAATAATGCCTTGTCTTTATCCACTAAACTTCAGCTTGAAGAAGTTTCTGATACTCTTTACACTCGTCCTTCTTATCTCTCCAACATATCTAAGCTTATGCCTTTTCTTCTTGGTTCCACCACCACTACCACCGCCCTCGGATCCACGTTTACGGTTAATTCCACCATTGTTGAAATGCTTCAAGACAAGATCAATGGTGGGCAGAATCCTAGATGGTCCGATTGTGATTGTAAACCTTGTACTCGTTGGTCTTCTTCCCCTAAACAATCCCTCTTTGTTCGTTCGCAAGGACCCAAAGATCACCCACGTGAAGACGTACTGTTCATTCATGGCTTCATTTCTTCATCGGCTTTTTGGACGGAAACCCTCTTCCCAAACTTCTCCGCGTCGGCCAAATCTTCGTATCGGTTCCTCGCCGTCGATCTTCTCGGCTTTGGTCGCAGCCCAAAGCCAGCCGATTCACTCTACACATTGAAAGAGCACGTCGACATGATCGAAACCTCAGTTCTTGAGGCCTACAAAGTCAAGTCCTTCCACATCGTCGCTCATTCCCTCGGCTGTATTTTGGCTCTCTCTTTAGCCGTCAAGCATCCCGGCTCTGTCAAGTCGCTAACACTACTTGCACCGGTACCCGTATTATCCGGTACCGAAGGGAGTAGAACCGAGCCAATACGTGATGAGGAAGGTGGCGCCGCGGCGGGTGTGGCCGCCGATAGCCCTAGGGGCGTCGATTGCTTGCTGGTACGAGCACATCTCAAGGACGGTGTGCCTACTCATATGCAAGAATCATCGCTTTTGGGAGTTTCTAACCAAATTTCTCACCAGAAACAGATAGGCTACAATATTTCTCATCTGATCCGAATAGAGTCATTTTTAGTGGAGGGATTCTTCGCGCACACGCACAACGCCGCGTGGCACACACTACACAACGTCATATGTGGCACCGGCGGAAAGATAGAGAGATATTTGGACGCCGTCCGAGAGCGCGTGAACTGCCATGTCAACATATTCCACGGCAGCGACGACGACGTGGTTCCGTTGGACTGCAGCTACAACGTGAAGACGCGTGTACCAAGGGCGCGTGTGAATGTTGTACAAAACAAAGACCACATCACAATCGTTGTTGGACGACAAAAAGCCTTTGCTAGAGAGCTTGAGGAAATTTGGAGAAACTCAAATGCTTAA 1461 46.13 MLAISSSSSSSSSSSSSSMAKSAKWVLKSIGHFTNEILSIFLFSLLDIIDIVLCFVYKMADFFFESQWKPCYCSSHKEAITSSDGNKVLVSQNNALSLSTKLQLEEVSDTLYTRPSYLSNISKLMPFLLGSTTTTTALGSTFTVNSTIVEMLQDKINGGQNPRWSDCDCKPCTRWSSSPKQSLFVRSQGPKDHPREDVLFIHGFISSSAFWTETLFPNFSASAKSSYRFLAVDLLGFGRSPKPADSLYTLKEHVDMIETSVLEAYKVKSFHIVAHSLGCILALSLAVKHPGSVKSLTLLAPVPVLSGTEGSRTEPIRDEEGGAAAGVAADSPRGVDCLLVRAHLKDGVPTHMQESSLLGVSNQISHQKQIGYNISHLIRIESFLVEGFFAHTHNAAWHTLHNVICGTGGKIERYLDAVRERVNCHVNIFHGSDDDVVPLDCSYNVKTRVPRARVNVVQNKDHITIVVGRQKAFARELEEIWRNSNA 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1388484 1394236 + Lsi09G001370.1 Lsi09g00137 669750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00137 486 PRINTS Alpha/beta hydrolase fold signature 226 241 IPR000073 -
Lsi09g00137 486 PRINTS Alpha/beta hydrolase fold signature 286 299 IPR000073 -
Lsi09g00137 486 PRINTS Alpha/beta hydrolase fold signature 272 285 IPR000073 -
Lsi09g00137 486 Pfam alpha/beta hydrolase fold 198 465 IPR000073 -
Lsi09g00137 486 Gene3D alpha/beta hydrolase 168 483 IPR029058 -
Lsi09g00137 486 PANTHER LYSOPHOSPHOLIPASE BODYGUARD 3-RELATED 21 485 - -
Lsi09g00137 486 PANTHER HYDROLASE 21 485 - -
Lsi09g00137 486 SUPERFAMILY alpha/beta-Hydrolases 175 479 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00137 - - - csv:101222570 705.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01689 Lsi-Chr3:28139485 Lsi09g00137 Lsi-Chr9:1388484 8.28E-84 dispersed
Lsi08g01344 Lsi-Chr8:21732820 Lsi09g00137 Lsi-Chr9:1388484 3.06E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g243 . . . . . . Bma07g01025 Bma14g00101 . . Cma02g00943 Cma15g01315 Car02g00691 Car15g01183 . . Cpe05g00771 . . . . . . . . . . . . . . . Cone12ag0589 . . . Csa05g00165 Chy09g01333 . Blo03g00802 Blo19g00137 Bda07g00152 Bda09g00638 Bpe08g00902 Bpe11g00370 . . . Cmo02g00951 Cmo15g01380 . . . . . . Bhi12g00085 . . . . . Lcy12g1519 Cla01g00146 Cam01g0151 Cec01g0147 Cco01g0153 Clacu01g0146 Cmu01g0146 Cre09g2360 Lsi09g00137 . . Cme09g01881
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006200 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00137 Lsi_Chr09 FPKM 8.435043 10.012054 4.718568 4.442233 5.703624 4.883123 5.634856 0.285443 0.0 0.0