Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00140 ATGGCGACCGTGATTCCCCGACAAGACGAGCGAGCCGGAGCAGAAATCGTATATGGACACGAAGAATGCTACCAACGATCGGTGGAGCTTTTAAAGGAACTCGGTTTCCCAAGCGGCGTATTGCCATTGCAAGAGTTGGAGGAGTGTGGGATGGTGAGGGAGACTGGGTTTATTTGGATGAAACAAAAGAAACCCTACGAGCACTTTTTCGAGACGACAAAGTCGCGCGTTGCGTACTCGACCGAGGTGACGGCATATGTTGAGAAGTTCAAGATGAAAAAGATGACGGGCGTGAAGAGCAAGCAGCTTCTTTTGTGGGTTCCTATTGGAGAGATGAGTATTGATGATCCTAATGGGAAGAAGATTTGTTTTAGAACTCCTGTGGGGATTGGGAAATCGTTTCCTGTAACTGCGTTTATGGTGGATGAAGAGAAGAAAAAGTATTTGGAGAAGGTTGAGGAATGA 465 46.88 MATVIPRQDERAGAEIVYGHEECYQRSVELLKELGFPSGVLPLQELEECGMVRETGFIWMKQKKPYEHFFETTKSRVAYSTEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIDDPNGKKICFRTPVGIGKSFPVTAFMVDEEKKKYLEKVEE 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1435436 1435900 - Lsi09G001400.1 Lsi09g00140 669753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00140 154 Pfam Protein of unknown function, DUF538 28 139 IPR007493 -
Lsi09g00140 154 Gene3D - 9 150 IPR036758 -
Lsi09g00140 154 PANTHER T19F6.7 PROTEIN 7 152 - -
Lsi09g00140 154 SUPERFAMILY At5g01610-like 9 146 IPR036758 -
Lsi09g00140 154 PANTHER T31J12.3 PROTEIN-RELATED 7 152 IPR007493 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00140 - - - csv:101223048 265.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00140 Lsi-Chr9:1435436 Lsi11g00649 Lsi-Chr11:6843080 2.03E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g236 . . . . . . . Bma14g00104 . . . Cma15g01313 . Car15g01181 . . . . . . . . . . . . . . . . . . Cone12ag0554 . . . Csa05g00168 Chy09g01330 . Blo03g00807 . Bda07g00149 . . Bpe11g00366 . . . . Cmo15g01378 . . . . . . Bhi12g00090 . . Lac11g1929 Hepe06g1440 . Lcy12g1526 Cla01g00149 Cam01g0154 Cec01g0150 Cco01g0156 Clacu01g0149 Cmu01g0149 Cre09g2357 Lsi09g00140 . . Cme09g01878
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011678 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00140 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0