Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00141 ATGGCGGCGGAGATTGCAAAGGAGTCGTCGATCGAGGCCGATCAAACCATCATTGAAGATGGTGGAGAATCGGGTAACAACGCACGATGGAAGAAACTTCAACCATGGACGAGGCAATTAACAGTCAGAGGAGTGATAGTGAGCGTCATTATTGGAAGCATCTATAGTGTCATAGCCATGAAACTAAACCTCACCACCGGACTTGTCCCAAATCTCAATGTCTCTGCAGCTCTTCTAGCGTTTGTCTTTGTTCGAACGTGGACTAAAACCTTGCAAAAAGCTGGCTTTGTAACTAAACCCTTCACTCGTCAAGAGAACACCATGATCCAAACCTGCGCTGTCGCCTGTTACAGTATCGCAGTTGGAGGTGGGTTTGCTTCATATTTGTTGGGAATGAATAGAAAGACATATGAATTATCAGGAATAAATACAGAAGGAAATTCTTCATACAGTGTGAAAGAGCCAGGATTGGGATGGATGACAGCATTTCTTTTTATTGTTTGCTTTGTGGGTCTTTTCATTTTGATTCCACTCAGAAAGGTAATGATAGTGGACCTGCAGTTGACATATCCTAGTGGCATGGCTACAGCAGTTCTCATCAATGGCTTTCACACTCAGGGCGATGAGATGGCAAAGAAGCAAGTAAAAGGGTTTATGAAGTACTTTTCATTTAGCTTCTTTTGGGGTTTATTTAAGTGGTTCTTTAAAGGCAAAGAAAAGTGTGGTTTCTCTGAGTTCCCCACTTTTGGACTCAAAGCTTGGAAGCAAACATTCTTCTTCGATTTTGACTCAACTTTTGTGGGAGCAGGGATGATTTGTTCCCATTTAGTGAACTTGTCTTTACTTCTAGGAGCCATCCTATCTTATGGCCTAATGTGGCCTCTTCTTGATCGACTCAAAGGCCACTGGTACCCTGAAAGCTTGGAAGAAAGTGACATGAAAAGTTTATATGGATACAAGGTCTTTTTATCTGTTGCTCTGATTCTAGGAGATGGACTTTACAATTTCATCAAGATTCTTGGTTCAACAATCTTAAATGTACACAATAGAGTCAAGAAAGCAAAAGCAGGTTTAGATGACAACAAAAAACCAACAACAGACGAAAAGAAAGACGAAATGTTCTTAAGAGAAAACATCCCATTGTGGGTGGGACTCATTGGCTACACAACCTTGGCCTTAATTTCAACCATTGTTATCCCTCAAATGTTCCCTCAACTCAGATGGTACTTTATCGTTGTCGCCTATGTCCTCGCCCCCTCCCTCGCCTTCTGCAACGCTTACGGTGCCGGTCTCACGGACATCAACATGGCCTACAACTACGGCAAGGTTGCTCTCTTTCTCCTCGCCGCCCTTAGCCCAAAACATGATGCTCTTATCGCGGGCCTAGCCGGTTGCGGTCTCATAAAGTCCGTTGTCTCAGTTGCATGCATTCTCATGCAAGATTTCAAAACAGCCCATTTGACCTCCACCTCCCCTAGAGCCATGTTTGTTAGCCAATTGATCGGCACGACGGTCGGGTGTGTCACGGCGCCACTAAGCTTCTTCTTGTTCTACAAGGCATTCGACGTGGGAAATCCAGAGGGGGAGTTCAAGGCGCCATACGCTTTGATATATAGGAACATGGCGATTCTAGGAGTCGAGGGAGTTTCGGCTTTGCCGAAGCATTGCTTGCAGATTTGTTATGGGTTTTTCGGGTTCGCGATTGGGGTGAATTTAGTGAAGGATTTTGGAGGTGGGAGGATTGGGAAATGGATGCCATTGCCGATGGTAATGGCAGTACCATTTTTGGTTGGTGGGTATTTCGCCATTGATATGTGTTTGGGGAGTTTGATTGTGTTTGTTTGGGGTAAAATTAATAAGGAAAAGGCAGAGATGATGTTGCCGGCGGTGGCTTCTGGGTTGATTTGTGGGGAAGGCCTTTGGACTTTACCAGCTTCTGTTCTTGCTCTTGCTAAGATTAATCCTCCTATCTGTATGAAGTTTGTGCCCTCATAG 1995 44.46 MAAEIAKESSIEADQTIIEDGGESGNNARWKKLQPWTRQLTVRGVIVSVIIGSIYSVIAMKLNLTTGLVPNLNVSAALLAFVFVRTWTKTLQKAGFVTKPFTRQENTMIQTCAVACYSIAVGGGFASYLLGMNRKTYELSGINTEGNSSYSVKEPGLGWMTAFLFIVCFVGLFILIPLRKVMIVDLQLTYPSGMATAVLINGFHTQGDEMAKKQVKGFMKYFSFSFFWGLFKWFFKGKEKCGFSEFPTFGLKAWKQTFFFDFDSTFVGAGMICSHLVNLSLLLGAILSYGLMWPLLDRLKGHWYPESLEESDMKSLYGYKVFLSVALILGDGLYNFIKILGSTILNVHNRVKKAKAGLDDNKKPTTDEKKDEMFLRENIPLWVGLIGYTTLALISTIVIPQMFPQLRWYFIVVAYVLAPSLAFCNAYGAGLTDINMAYNYGKVALFLLAALSPKHDALIAGLAGCGLIKSVVSVACILMQDFKTAHLTSTSPRAMFVSQLIGTTVGCVTAPLSFFLFYKAFDVGNPEGEFKAPYALIYRNMAILGVEGVSALPKHCLQICYGFFGFAIGVNLVKDFGGGRIGKWMPLPMVMAVPFLVGGYFAIDMCLGSLIVFVWGKINKEKAEMMLPAVASGLICGEGLWTLPASVLALAKINPPICMKFVPS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1437241 1446052 - Lsi09G001410.1 Lsi09g00141 669754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00141 664 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 17 663 IPR045035 GO:0035673
Lsi09g00141 664 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 17 663 - -
Lsi09g00141 664 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 34 647 IPR004813 GO:0035673
Lsi09g00141 664 Pfam OPT oligopeptide transporter protein 39 648 IPR004813 GO:0035673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00141 - - - csv:101202776 1240.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01444 Lsi-Chr3:25373954 Lsi09g00141 Lsi-Chr9:1437241 0 dispersed
Lsi06g00965 Lsi-Chr6:19598194 Lsi09g00141 Lsi-Chr9:1437241 0 dispersed
Lsi07g01490 Lsi-Chr7:21723639 Lsi09g00141 Lsi-Chr9:1437241 0 dispersed
Lsi09g00141 Lsi-Chr9:1437241 Lsi09g00142 Lsi-Chr9:1454169 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g232 . . . . . . . Bma14g00105 . . Cma02g00941 . Car02g00689 . . . Cpe05g00773 . . . . . . . . . . . . . . . . . . . Csa05g00169 Chy09g01329 . . . Bda07g01951 . . . . . . Cmo02g00950 . . . . . . . Bhi12g00091 . . Lac11g1930 Hepe06g1441 . . Cla01g00150 Cam01g0155 Cec01g0151 Cco01g0157 Clacu01g0150 Cmu01g0150 Cre09g2356 Lsi09g00141 . . Cme09g01876
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000598 4 9 3 3 2 3 3 3 3 4 3 3 3 4 4 3 3 3 3 3 4 2 2 2 2 4 2 4 10 3 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00141 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0