Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00142 ATGGCGGCCGAGATTGCGAAGGAGCCAGTCGAGGTTGATCACACTGTTGTCGAAGATGGCAGAGAATTGGGCAACAACCTGCAATGGAAAAGGCTTCAACCATGGACGAAGCAATTAACAGTTAGAGGAGTAATATCGAGTGTCATTATTGGAAGCCTCTACAGTATCATAGCCATGAAACTAAACCTTACTATTGGACTCGTCCCTAATCTCAACGTCTCCGCCGCTCTTCTTGCTTTCGTCTTTGTTCGAGTGTGGACTAAAACCCTTCAAAAAATTGGCTTTGTAACTAAACCCTTCACTCGTCAAGAAAACACAATGATCCAAACTTGCGCTGTTGCCTGTTATAGTATCGCAGTTGGAGGTAAATATTATTCTTTATCAAATCTTTACAAAATGGTTGGTGGTGTACAGATTATGATAGTGGACCTGCAATTGACATTTCCCAGTGGCATGGCAACAGCAGTTATGATCAATGGCTTCCACAATCAGGATGATGAAATGGCAAAGAAGCAAGTTAAAGGTTTTATGAAGTACTTTTCATTCAGTTTCTTTTGGGCTTTGTTCAAGTGGTTCTTTTCGGGCAAAAATGAGTGTGGTTTCTCTCAGTTCCCTACTTTTGGACTCAAAGCTTGGAAGCAAACATTCTTCTTCGATTTCGACTCAACTTTTGTGGGAGCTGGGATGATTTGCTCCCACTTAGTGAATTTATCTTTACTTCTAGGAGCCATCCTATCTTATGGCCTAATGTGGCCTCTTCTTGATCAACTCAAAGGCCATTGGTATCCTGATAACTTGGACGAAAATGACATGAAGAGTTTATATGGATACAAGGTATTTTTATCTGTTGCCCTGATTCTAGGAGATGGACTTTACAACTTCGTCAAAATTCTTACTTCGACGATCATAAATATATGCAAAGTCAGGAAAGCAAAAAGAGAAAAATTCGAAGTCTTGATTAGAAACTTTGTTACCTTCTTAAACAAAAAGCAAGATGAAATCTTCTTAAGAGAAAGCATCCCATTGTGGGTTGGAGTCATTGGCTACTTAATCTTGGCAACAATGTCCACCATTGTTATCCCACAAATGTTCCCTCAGCTCAAATGGTACTTCGTCATTGTTGCTTATATCCTCGCCCCCTCCCTCGCCTTCTGCAATGCTTATGGTGCCGGTCTCACAGACATCAACATGGCCTTCAACTACGGCAAAATCGCCCTCTTCATCCTTGCTGCAATCAGTCCGAAACACGAGGCCCTCATCGCCGGTCTAGCTGGCTGCGGTCTCATAACATCTGTCGTCTCCGTCGGTTGCACTCTAATGCAGGATTTCAAAACGGCCCATTTGACCTCCACCTCCCCTAGAGCCATGTTTGTCAGCCAGTTGGTCGGTACGACAGTCGGGTGTGTCACGGCGCCGTTGAGCTTTTTTCTATTCTATAATGCGTTCGACGTGGGAAATCCAAATGGGGAGTTCAAGTCGCCATACGCTTTGATATATAGGAACATGGCAATTCTAGGAGTCGAAGGGGTCTCAGCTTTACCGGAGCATTGCTTGCAGATTTGTTATGGATTTTTCGGGTTCGCGATCGGGGTGAATTTAGTGAAGGATTTTGGAGGTGGGAAGATCGGGAAATGGATGCCGGTGCCGATGGTGATGGCGGTGCCATTTCTAGTTGGAGGGTTTTTCACCATTGATATGTGTTTAGGGAGTTTGATTGTGTTTATTTGGGGTAAAATGAATAAGAAGAAGGCAGAGTTGATGCTACCGGCAATAGCTTCCGGCTTGATTTGTGGGGAAGGCCTTTGGGCTATACCGTCCTCCTTTCTTGGTCTTGTTAAGATTAATCCTCCTATTTGCATGAAGTTTGTGCCCTCATAG 1878 43.72 MAAEIAKEPVEVDHTVVEDGRELGNNLQWKRLQPWTKQLTVRGVISSVIIGSLYSIIAMKLNLTIGLVPNLNVSAALLAFVFVRVWTKTLQKIGFVTKPFTRQENTMIQTCAVACYSIAVGGKYYSLSNLYKMVGGVQIMIVDLQLTFPSGMATAVMINGFHNQDDEMAKKQVKGFMKYFSFSFFWALFKWFFSGKNECGFSQFPTFGLKAWKQTFFFDFDSTFVGAGMICSHLVNLSLLLGAILSYGLMWPLLDQLKGHWYPDNLDENDMKSLYGYKVFLSVALILGDGLYNFVKILTSTIINICKVRKAKREKFEVLIRNFVTFLNKKQDEIFLRESIPLWVGVIGYLILATMSTIVIPQMFPQLKWYFVIVAYILAPSLAFCNAYGAGLTDINMAFNYGKIALFILAAISPKHEALIAGLAGCGLITSVVSVGCTLMQDFKTAHLTSTSPRAMFVSQLVGTTVGCVTAPLSFFLFYNAFDVGNPNGEFKSPYALIYRNMAILGVEGVSALPEHCLQICYGFFGFAIGVNLVKDFGGGKIGKWMPVPMVMAVPFLVGGFFTIDMCLGSLIVFIWGKMNKKKAELMLPAIASGLICGEGLWAIPSSFLGLVKINPPICMKFVPS 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1454169 1459423 - Lsi09G001420.1 Lsi09g00142 669755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00142 625 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 19 126 IPR045035 GO:0035673
Lsi09g00142 625 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 130 624 IPR045035 GO:0035673
Lsi09g00142 625 Pfam OPT oligopeptide transporter protein 139 609 IPR004813 GO:0035673
Lsi09g00142 625 Pfam OPT oligopeptide transporter protein 38 135 IPR004813 GO:0035673
Lsi09g00142 625 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 19 126 - -
Lsi09g00142 625 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 130 624 - -
Lsi09g00142 625 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 139 608 IPR004813 GO:0035673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00142 - - - csv:101207252 1051.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00141 Lsi-Chr9:1437241 Lsi09g00142 Lsi-Chr9:1454169 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g231 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0553 Cone12ag0552 . . . Csa05g00170 Chy09g01328 . Blo03g00808 . Bda07g00148 . . Bpe11g00365 . . . . . . . . . . . Bhi12g00092 . . . . . Lcy12g1527 . . . . . . . Lsi09g00142 . . Cme09g01875
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000598 4 9 3 3 2 3 3 3 3 4 3 3 3 4 4 3 3 3 3 3 4 2 2 2 2 4 2 4 10 3 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00142 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 7.192583 7.601571 7.646838