Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00145 ATGATCACTCTCGCTTCTGCTTATTTATCATCTTCCCCTTCCAATCTCTCTTCTCTCAAGAATCTTCGTCTCTTCAAACCCTCTTCCACATTCTCACCATCACTCTCTAATCTCAAACCCTTAAATCCTTTCCTCAAACCACCTTCCAATCAGAGCAGGATCGGGAATGGGATTTGTAGGGCCGAATTGGGTAACGACGCACCCTTCGCTATTGCGATCGGTGCTTGTATTCTCAGTTCTCTTGTTTTTCCGGCTGCCGACGGTGCTTCCGATGATGAGAGCGATGCCGTCATTGATTCCACCGATACCAGGCTCGCCGTTATGAGCATCATTAGCTTTATCCCCTACTTCAATTGGCTGTTCAATCCTCACTCTGCAATTGTCAAAGTCGAAGAACTTTTGTTTTATGAAGTTGATTTGTATTTTGGGGTGGGGGTGGGTGGCATTGTGGTTGCTTGGAGGTCAAACTTATCGTTGTCGCCCGAAGAGAGCTGGCTTCCTATTGTTAGTATACTTCTCTGCATTATTCACATTCAGCTTGAAGTGAGCATTACAAATGGAGATATTCAACCTCTCCAACTATTTGGGAAAGCTTCAAAGCAAATTTCTTCAACCAAGAAAGGGAGAGACCATTTCAAGGGGTCCCAAGGACCATACAAAGAGGACAGGGAGCTACCGTCGTCGGAGGAACAATTTCGAGATAAGATCAGAAGATGGGGAGATTCTAAAGAGACAGGTTTAGGGTTTAACCACAAGCAATTCCTCTCCTTCCCTAACTTTTTCTTTCTACGCACTTTCATGGCTACTTCTCCCCTCGCTTCCCTTTCCCCTGCTTCTCCTTCTGATTCCATTTCCGTTAAGCGAGTCGGGACTCACCATGGGAGCTTCCATTGCGATGAAGCGCTTGGTTGCTTCATGATTCGCTTGACGGATAAGTTCTCTAATGCTCAAATTGTTCGAACCCGTGATCCCCAGGTACTAGATGGTCTTGATGCAGTCCTTGATGTTGGGGGCGTATATGATCCAAGTCGTGATCGATATGATCATCATCAAAAGGGGTTTGAAGAGGTTTTTGGCCATGGTTTCTCCACTAAGCTTAGCAGCGCTGGTCTTGTTTATAAGCATTTTGGGAAGGAGATTATTGCGAAGGAACTTCAAGTTGATGAAGGGCATCCAGATGTGCACAGGCTGTTTTTGGCTGTTTACAAAAGTTTCATGGAGGCAATTGATGCTGTAGATAACGGCATTAATCAGTATGATACGGATAAGCCACCAAAATATGTGAATAACACACACCTATCTTCGAGGGTGGGGAGATTGAATCTGGACTGGATAGAACCTGATCAATCATCCGAGAATGAGAATAAGGCCTTCGAGAAAGCAATGGCCTTGGCTGGCAGCGAGTTCTTAGATAGTGTTAGATTTCATGCAAAGTCATGGCTACCAGCAAGGTCAATTGTGATGGGATGTCTTGCAGCAAGACATGAGATTGACCCTAGTGGAGAAATAATGATTTTGACAACATTTTGCCCTTGGAAACTTCATCTATTTGAGCTCGAACAGGAGTTGAAGATTGAAAATTCGATCAAATATGTGCTCTATGAAGATGATAGAAGCAAACATTGGCGAGTGCAGGCAGTGGCAGTATCTCCGGACAGATTTGAGAGTCGTAGGCCTCTGCCTGCCCAATGGCGAGGTTTAAGGGATGAGGAACTCTCAAAAGAGTCTGGGATACCTGGTTGTGTGTTTGTTCATATGAGTGGCTTTATTGGTGGAAATCAAACTTACGAAGGGGCTCTTACTATGGCGAAACATGCATTGAAGCTGTAG 1830 44.81 MITLASAYLSSSPSNLSSLKNLRLFKPSSTFSPSLSNLKPLNPFLKPPSNQSRIGNGICRAELGNDAPFAIAIGACILSSLVFPAADGASDDESDAVIDSTDTRLAVMSIISFIPYFNWLFNPHSAIVKVEELLFYEVDLYFGVGVGGIVVAWRSNLSLSPEESWLPIVSILLCIIHIQLEVSITNGDIQPLQLFGKASKQISSTKKGRDHFKGSQGPYKEDRELPSSEEQFRDKIRRWGDSKETGLGFNHKQFLSFPNFFFLRTFMATSPLASLSPASPSDSISVKRVGTHHGSFHCDEALGCFMIRLTDKFSNAQIVRTRDPQVLDGLDAVLDVGGVYDPSRDRYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKEIIAKELQVDEGHPDVHRLFLAVYKSFMEAIDAVDNGINQYDTDKPPKYVNNTHLSSRVGRLNLDWIEPDQSSENENKAFEKAMALAGSEFLDSVRFHAKSWLPARSIVMGCLAARHEIDPSGEIMILTTFCPWKLHLFELEQELKIENSIKYVLYEDDRSKHWRVQAVAVSPDRFESRRPLPAQWRGLRDEELSKESGIPGCVFVHMSGFIGGNQTYEGALTMAKHALKL 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1474523 1481693 + Lsi09G001450.1 Lsi09g00145 669758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00145 609 Pfam Uncharacterised protein family (UPF0160) 289 607 IPR003226 -
Lsi09g00145 609 PANTHER METAL-DEPENDENT PROTEIN HYDROLASE 265 608 - -
Lsi09g00145 609 PANTHER METAL DEPENDENT HYDROLASE - RELATED 265 608 IPR003226 -
Lsi09g00145 609 MobiDBLite consensus disorder prediction 205 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00145 K25877 MYG1; MYG1 exonuclease [EC:3.1.-.-] - csv:101203739 694.115
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g229 . . . . . . Bma07g01018 . . . Cma02g00938 . Car02g00687 . . . Cpe05g00775 . . . . . . . . . . . . . . Cone8ag0548 . . . . Csa05g00173 Chy09g01324 . . Blo19g00142 . Bda09g00647 Bpe08g00894 . . . . Cmo02g00948 . . . . . . . Bhi12g00095 . . Lac11g1936 Hepe06g1443 . Lcy12g1530 Cla01g00153 Cam01g0158 Cec01g0154 Cco01g0160 Clacu01g0153 Cmu01g0153 Cre09g2353 Lsi09g00145 . . Cme09g01872
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007612 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 2 2 2 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00145 Lsi_Chr09 FPKM 19.225214 22.289165 67.698647 67.847649 25.863213 23.589403 24.550022 28.957777 28.700417 30.473396