Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00148 ATGAGTTGCGGTTCGGATTTGATGATGTCTGGGAATTCTGAGGCTGATGATCGTGAGATTGTTGAAAAGGATCCATCAGGACGGTACATACGGGGTGTATTATTTGACTTGAGGTCTGTTTATGTTGTCATTAGATACAAAGCATTCGACGAAGTTGGCGGAATCGAAGTTGCTTGGAGTCAAGTGGACATTGAAGATGTTTTGCAGTCACCAGAACAACTTCAAAGATTGTATTCTGAGGTCCATCTGTTGAAGTCACTGAAACATGAAAATATCATCAAGTTCTATAGCTATTGGGTTGATGATAAACAAAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCATAGGAAAGTTGACTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGAGGTTTAACATATTTGCATGGTCACAACCCTCCTATCATTCACAGGGATTTGAAATGTGATAATATATTTGTTAATGGGAATACTGGAGAAGTTAAAATTGGAGATCTAGGATTGGCGATTGTGATGCAGCAGCCTACTGCTCGAAGTGTAATTGGCACTCCAGAGTTCATGGCTCCAGAACTTTATGATGAGGACTATAATGAACTTGTTGACATATATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCGGGTATAAAGCCTGCTTCCCTTGAGAAAGTGCTGGACCCTCAAGTTAAGCAATTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGACTACCTGCAAGTGAACTCTTGAAAGATCCTTTCCTTGCAACTGAAAGTCCCAAGGAGCATAGTTCTGAACTTTCAAGGTTGTTGAATGAGCAGATCAAATCTGTGAATCCTCCTCTGCCTGGTTCTCATCCAATGGACACAGACCCTAACAGCAGCAAACTCTCAGCCTCAGTGGGCTCATCTGTCAAAAGCAATAATGGAATTTCTCACTTTACAACTCTAGAACTTCAGAGGCTCTCTGAGAATAATGAATTGACACTGAAAGGGGACATGACTGATCATAATACAATGTCATTCCATTTGCGTATCGCTGAACTATATGGTAAATCTAGGAATATCCATTTTGCCTTCTATCTCGACTCTGATACTTCTATGGCAATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCAAATGAAGATGCGACTATCATAGCAAAACTAATTGATGAATTAATTGCCAAGTTTGTTCCTAGCTGGAAACCATGTCCAAACTATTGTCAAGAACAAAATACTTCACATAGTTCTTCTGAAACTCAAGAGGATAAGACCTTCATTCCTCCTTTCTTCTCTGAGCTAGTACTGTCATCTCCCATGGTGGCTGCTGCTGCAAGGAATAACCCGACGGATTTGACCAAGGTCGAAGATCAAGAAAACCAGCAGTCGATTATTTCGTGTGCTTCCGTGGAATACATTTACTCAACTGTCTCAGATTACAGCATAGGAAAAGGATCAGAATGTGGTGAGTTTGGCCACCCTGAATGCGACAAAGCTTATATTAGCAATGGAACAATCGATTTAGATTCAGAAGCTGTTGGATCTATTCCAACAATGATCGATTTTGCAAAACCATCTCTAATCTCCTCCTGCTCTGGAATGTCCAAAGAATTGAGTTTATCTAGCTTTTCCACTCTTTCTCTGGATGAAAGAGATCACCAAGATGAACTCAAAATGGAGATTGATGCTATTGATTTGCAGTACCACCAATGCCTGTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAACTGCCAAGAAGAGGTGGATGTCAAAGAAGAAAGCTACTGGTATTTGA 1905 40.37 MSCGSDLMMSGNSEADDREIVEKDPSGRYIRGVLFDLRSVYVVIRYKAFDEVGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFYSYWVDDKQKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILRGLTYLHGHNPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATESPKEHSSELSRLLNEQIKSVNPPLPGSHPMDTDPNSSKLSASVGSSVKSNNGISHFTTLELQRLSENNELTLKGDMTDHNTMSFHLRIAELYGKSRNIHFAFYLDSDTSMAIALEMVEQLELSNEDATIIAKLIDELIAKFVPSWKPCPNYCQEQNTSHSSSETQEDKTFIPPFFSELVLSSPMVAAAARNNPTDLTKVEDQENQQSIISCASVEYIYSTVSDYSIGKGSECGEFGHPECDKAYISNGTIDLDSEAVGSIPTMIDFAKPSLISSCSGMSKELSLSSFSTLSLDERDHQDELKMEIDAIDLQYHQCLCELSRMREEAIETAKKRWMSKKKATGI 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1497210 1500893 - Lsi09G001480.1 Lsi09g00148 669761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00148 634 Gene3D Phosphorylase Kinase; domain 1 13 112 - -
Lsi09g00148 634 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 629 - -
Lsi09g00148 634 Pfam Protein kinase domain 56 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00148 634 SUPERFAMILY Protein kinase-like (PK-like) 46 289 IPR011009 -
Lsi09g00148 634 SMART serkin_6 41 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00148 634 ProSiteProfiles Protein kinase domain profile. 20 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00148 634 MobiDBLite consensus disorder prediction 309 335 - -
Lsi09g00148 634 MobiDBLite consensus disorder prediction 1 20 - -
Lsi09g00148 634 Gene3D Transferase(Phosphotransferase) domain 1 114 295 - -
Lsi09g00148 634 MobiDBLite consensus disorder prediction 321 335 - -
Lsi09g00148 634 PANTHER WNK KINASE 12 629 - -
Lsi09g00148 634 Gene3D - 371 472 - -
Lsi09g00148 634 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 383 430 IPR024678 GO:0004674|GO:0005524
Lsi09g00148 634 CDD STKc_WNK 46 288 - -
Lsi09g00148 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02147 Lsi-Chr5:28239230 Lsi09g00148 Lsi-Chr9:1497210 4.04E-10 dispersed
Lsi09g00148 Lsi-Chr9:1497210 Lsi10g01482 Lsi-Chr10:18920267 1.27E-133 dispersed
Lsi09g00148 Lsi-Chr9:1497210 Lsi11g00467 Lsi-Chr11:4910270 1.49E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83872 PF00069 Pkinase 3.90E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00148 K08867 - csv:101207748 1107.82