Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00149 ATGTCCTTGCCGGATATGGTTGATGTTTCTGATAAATTAGCCTATTTCCAAGCGATTACAGGCTTAGAAGATCCCGAAATCTGCACCGAAATCCTTGCCGCTCACGGTTGGGACCTCGAATTAGCCGTTTCTTCTTTTACTGCCACCAATTCAGAATCCTCTGCTTCCGCCGCCGCCGATGGTGGTGGTGGTGGTGGCGATGCCCATTTTGACCCTGCGGCGCGCGAAATCCTCGATAGACCGGAACCGCAAGAAAATGCTGCTCCGGCCCCGAGTTTGGCTTGGAAAATCATAACGCTTCCGATTTCTGTGATTTCTGGTAGTTTAGGGCTTGTTTCGGGTGCTGTTGGTCTTGGATTATGGGCTGCTGGTGGTATTCTTTCGTATTCTCTTGGAGTGATCGGTTTTGGGTCTGGTTCTGGCCGGAATGCTGAGTCGTCGGCTCGGTTGGTTTCTGTGTCTGCTGCAGCATCGGAGGCTATTGATTTTGTGTCGGCGTTTGAGAGGGATTATGGGACGACTAGGCCGAGTTTTGTGGGGGAAGGGTTCATGGACGCGTTGCAGCGTTCAAGAAATGCGTTTAAGCTCTTGTTTGTTTACCTGCACTCTCCTGATCATCCCGATACGCCATTGTTCTGTGAGAGGACCTTGTGTTCGGAGACTGTTGCAGCGTTCGTGAATGAGAATTTTGTTTCGTGGGGAGGGAGTATTCGCGCTAGTGAAGGTTTTAAGATGAGTAATAGCTTGAAAGCATCAAGATACCCATTTTGTGCTGTGGTTATGGCAGCTACAAATCAGAGGATCGCATTGCTTCAGCAGGTTGAGGGACCAAAAACTGCCGAAGAAATGCTAGTGATTCTACAGAGAGTTCTTGAAGAAAGTGCTCCTGTTCTGGTTTCGGCTAGGCTTGATGCAGAAGAAAGAAGAAATAACATGCGATTGAGAGAGGAACAAGATGCTGCTTACAGAGCTGCCCTTGAAGCAGATCAAGCCAGGGAACGACAAAGAAGGGAGGAGCAAGAGCGCCTTGCAAGGGAAGCTGCTGAAGCTGAGAGGAAGAGGAAGGAGGAAGAAGAGGCTCGTGAAAGAGCTGCTCGTGAAGCTGCCGAAAGAGAGGCTGCTTTAGCTAGAATGCGGCAGGAGAAAGCCATGTCCCTTGGTGCTGAACCAGAAAAAGGGCCTAATGTTACACAAGTGTTGGTGCGGTTCCCTACTGGAGAACGCAAGGAACGGAGGTTTCACAGTACCGCTTCGATCCAAACTCTCTACGACTACGTCGATTCCTTGGGTTGTTTGGAGGTTGATAGTTATAATCTGGTATCGAACTTCCCTCGAGTTGTTTATGGCGCCGATAAGCTGTCCTTGTCTTTGAAAGAAGCTGGACTACACCCTCAGGCCAGTCTTTTTGTGGAGCTAACCTCATGA 1425 49.47 MSLPDMVDVSDKLAYFQAITGLEDPEICTEILAAHGWDLELAVSSFTATNSESSASAAADGGGGGGDAHFDPAAREILDRPEPQENAAPAPSLAWKIITLPISVISGSLGLVSGAVGLGLWAAGGILSYSLGVIGFGSGSGRNAESSARLVSVSAAASEAIDFVSAFERDYGTTRPSFVGEGFMDALQRSRNAFKLLFVYLHSPDHPDTPLFCERTLCSETVAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMAATNQRIALLQQVEGPKTAEEMLVILQRVLEESAPVLVSARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLAREAAEAERKRKEEEEARERAAREAAEREAALARMRQEKAMSLGAEPEKGPNVTQVLVRFPTGERKERRFHSTASIQTLYDYVDSLGCLEVDSYNLVSNFPRVVYGADKLSLSLKEAGLHPQASLFVELTS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1505767 1512020 - Lsi09G001490.1 Lsi09g00149 669762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00149 474 Gene3D Glutaredoxin 146 297 - -
Lsi09g00149 474 Pfam UBX domain 392 471 IPR001012 GO:0005515
Lsi09g00149 474 SUPERFAMILY Ubiquitin-like 355 471 IPR029071 -
Lsi09g00149 474 MobiDBLite consensus disorder prediction 328 378 - -
Lsi09g00149 474 PANTHER FAS-ASSOCIATED PROTEIN 6 474 - -
Lsi09g00149 474 Coils Coil 323 381 - -
Lsi09g00149 474 Pfam UBA-like domain 11 52 - -
Lsi09g00149 474 CDD UBX 399 471 - -
Lsi09g00149 474 MobiDBLite consensus disorder prediction 328 379 - -
Lsi09g00149 474 ProSiteProfiles UBX domain profile. 392 470 IPR001012 GO:0005515
Lsi09g00149 474 SUPERFAMILY Thioredoxin-like 157 301 IPR036249 -
Lsi09g00149 474 SMART 45neu3 162 288 IPR006577 -
Lsi09g00149 474 Gene3D - 395 473 - -
Lsi09g00149 474 CDD UAS 178 293 - -
Lsi09g00149 474 CDD UBA_FAF 16 47 - -
Lsi09g00149 474 Gene3D - 7 57 - -
Lsi09g00149 474 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 6 474 - -
Lsi09g00149 474 SMART ubx_3 390 472 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00149 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101203982 704.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00391 Lsi-Chr2:3328971 Lsi09g00149 Lsi-Chr9:1505767 3.37E-45 dispersed
Lsi07g01416 Lsi-Chr7:20685879 Lsi09g00149 Lsi-Chr9:1505767 4.65E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g218 . . . . . . Bma07g00995 . . . Cma02g00934 Cma15g01308 Car02g00683 Car15g01178 . . Cpe05g00779 . . . . . . . . . . . . . . . Cone12ag0544 . . . Csa05g00177 Chy09g01319 . Blo03g00816 . . Bda09g00683 Bpe08g00875 . . . . Cmo02g00943 Cmo15g01375 . . . . . . Bhi12g00100 . . Lac11g1941 Hepe06g1448 . Lcy12g1536 Cla01g00157 Cam01g0162 Cec01g0159 Cco01g0164 Clacu01g0158 Cmu01g0157 Cre09g2349 Lsi09g00149 . . Cme09g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00149 Lsi_Chr09 FPKM 6.200517 7.268655 4.995194 6.133186 5.553627 6.195091 6.357797 6.218665 6.371667 5.990836