Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00151 ATGTCTGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGTCCAAAACCAAATGTTTCAATTTTAGAGAGGAAAATTAGACCTCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACTAAGTTTTGTTATTACAATAATTATAGTCTTACACAACCAAGATACTTTTGCAAAACTTGTAGAAGATATTGGACTGAAGGTGGCTCTTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGGAAGAACAAAAGACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTACATCTTCTACACCTTCTTCTTCATCTCAACCTATTATTATTCCCAACAAAAGTCTTCACCTCCCTCAAAACCCTAAAACCACTCAAGATCTCAACTTGTTCTTCCCACCCTCAAACCATCAAGATCATCATCATTTCACCACCAATAGCCTCCCTGAAATCGTTGTCGTCGGTGGTAACCCTACGATTGCCAGTTCCTCGTCGGCCTCTACTGTTGCGACGACGACAGCGGCATCTCATCATCAGCCTTCGGCAATGGAGCTTCTCACCGGGATGGCGAACAACAACTCTAGGGGAATGAATTGTTTCGTTCCAATGCCACCTGTCGTTGTCCCTGATCCTGGCTCTGTTTACACGGTAGGGTTTCCCGATCTCCACGATCAGTTCAAGTCGAGCCTTGGATTTTCTCTTGATGGCTACGGCGTCGTCCCGACCGAGGGAAGCAATGGTGGGGGGAGGCTTTTGCAGTTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGTTGAACAAGGCAAAGAGCAAGGAGATCATAATTCAAGTGGGTATTGGAGTGGAATGTTGGGTGGAGGATCATGGTAA 891 43.88 MSEIVVKPIEEIVTNTCPKPNVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSSSSSSSTSSTPSSSSQPIIIPNKSLHLPQNPKTTQDLNLFFPPSNHQDHHHFTTNSLPEIVVVGGNPTIASSSSASTVATTTAASHHQPSAMELLTGMANNNSRGMNCFVPMPPVVVPDPGSVYTVGFPDLHDQFKSSLGFSLDGYGVVPTEGSNGGGRLLQLPFEDLKQGSNGVEQGKEQGDHNSSGYWSGMLGGGSW 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1530361 1531425 - Lsi09G001510.1 Lsi09g00151 669764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00151 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 14 292 - -
Lsi09g00151 296 MobiDBLite consensus disorder prediction 88 130 - -
Lsi09g00151 296 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Lsi09g00151 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 292 IPR045174 GO:0003700|GO:0006355
Lsi09g00151 296 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Lsi09g00151 296 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Lsi09g00151 296 MobiDBLite consensus disorder prediction 267 296 - -
Lsi09g00151 296 MobiDBLite consensus disorder prediction 78 130 - -
Lsi09g00151 296 MobiDBLite consensus disorder prediction 271 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00151 - - - cmo:103482848 440.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00119 Lsi-Chr5:1885458 Lsi09g00151 Lsi-Chr9:1530361 1.95E-37 dispersed
Lsi05g02138 Lsi-Chr5:28199110 Lsi09g00151 Lsi-Chr9:1530361 2.28E-34 dispersed
Lsi08g00529 Lsi-Chr8:13243607 Lsi09g00151 Lsi-Chr9:1530361 2.41E-34 dispersed
Lsi09g00151 Lsi-Chr9:1530361 Lsi09g01676 Lsi-Chr9:25190964 9.05E-47 dispersed
Lsi09g00151 Lsi-Chr9:1530361 Lsi09g00009 Lsi-Chr9:70140 4.50E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g209 . . . . . . . . . . Cma02g00866 Cma15g01306 Car02g00682 Car15g01176 . . . . . . . . . . . . . . . . . . . . . . Csa05g00030 Chy09g01317 . . . Bda07g01944 . . . . . . Cmo02g00942 Cmo15g01373 . . . . . . Bhi12g00102 . . Lac11g1945 Hepe06g1450 . Lcy12g1540 Cla01g00159 Cam01g0165 Cec01g0162 Cco01g0166 Clacu01g0161 Cmu01g0160 Cre09g2346 Lsi09g00151 . . Cme09g01866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25858 PF02701 zf-Dof 4.30E-33 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00151 Lsi_Chr09 FPKM 9.411875 10.467927 23.360544 24.576893 4.229662 4.502054 4.679327 10.205252 9.839643 12.287964