Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00152 ATGATGGATTTGATTCACTGTGAGGAGGAAATTGAACAATTCTACGACACCCGTGAGGAGATCTCCTCTGTGTCTGATTGGGGATCTGATTGCTCTGAGAACTGCAGCACAAGTTTTGGGGATGACAGTGATGTTCCTGAAAATTTAAGATATGTGGGATGGATAAGAAACCTGGAAAGTGTTTGTGAGCGAAGAAACAAGTTCTTCAAATGGATGGGTTTGGATTTGGATCAGAATTTTGACGACAGAGACGAAGAGGAAGGGGATTCGTTCAGGAGGGTTTATCGTGATAGAATTCTGGAAGATTGTGGAACAGTGTTGAGACTTTCCGGTTCTGAAGGGGAGTTGTCTTCAAGTCTTACCATTTCTTCCATGTCAAATGAAGCTCCAGAATCATCAGGAAATGTTTCTGTGGAGGAGAATCATGCTTGTACTATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATAGTTTCAGTCAAGATGGAGTGTTGAGCATGTTACGCGAAGTTGGTTCGAACCGATCCTTCAGTTTTGATGAGTTTGAGAGAAACATTGGGCAATCTCCCTTGGTTCAGCAATTCTTTCGCAAAAATGTTGAAAAGGCTGGGCCTATAGTCAATCCCAGGAAAGAGGCAAAGAAGGGTTGGCTGAGAAAACTGGGTGCGGTTGCTTGTATAGTTGACAACGGGGAGGGCACAATGAAAAATGGTGTTTTCAATTCATCATCTAAGGCAGGGATACAACAAGTTCGCGTTCATCCATATAAAAAGCAATCCAAAGAATTATCATCCCTTTTTGTTGGACAAGAATTTGAAGCACATAAAGGGTCAATTTCTACAATGAAGTTCAGTTTTGATGGAAGATACTTGGCTACTGCTGGTGAAGATGGTGTTGTGCGTGTATGGCAGGTGATTGAAGATGTGAGATTCGATAATTTCGACATTCATAATGTCGATCCTTCCTCTTTGTACTTCTCAATGAATCATTTGTCCAAATTAGACCCCTTGGATCTGCCAAAAGAGACTGTTGGCAAGATGAAATTGAAGAGATCATCAAGCACAGCATGTGTAATTTTTCCACCAAAGCTATTTAGGATATTGGAGAAACCTCTGCATGAGTTCTTGGGACACAGTGGCGAGCTTCTGCTGTCATCTTCTGTTGATAAGACAGTACGTCTTTGGCAGCTGGGATGTGACACATGCCTAAGAGTTTACTGTCATAATAATTATGTAACGTGTGTTAGTTTCAACCCTATAGATGAAAATCATTTCATAAGTGGCTCAATAGACGGTAAAGTTCGGATTTGGGAAGTTCTTGCTTGTCAAGTGGTTGATTATATTGATATCCGTGAGATAGTAAGCGCAGTCTGTTACAGACCGGATGGAAAGGGAGGAATTGTGGGGTCCATGACTGGAAACTGCCGTTTTTATAATATTATAGATAATCGATTGGAGCTGGATGCTCAGATATGCTTAAATGGGAAAAAGAAGTCGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGCGACCCGAGCAAACTAATGGTATGCTCTGTGGATTCACCGGTTCATATTATTTCCGGGAGTGATGTCATTTGCAAATTCAAGGGTCTTCGCAATGGTGGAAACAAGATGTCTGCTTCTTTTACCTCCGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAACGTCTACGTTTGGAACTACAATTGCAAGGACAAAGCATCTCGGAAAAAGAAAATTTGGTCCTCCGAAAGTTTCTTCTCTCGTAGCGCGACAATAGCCATACCTTGGTCTGGTGTGAAAATCACACCTGAACCACCACTGTCCCCAACACGAGTTTGCGATACAGCAGGAAGTATCCCCGAAATGGAGCCGAAGTATCCTGATGATGATGGTGATAGAGAACACAAGGTTCCATCGTCGTCACCAGATTGCTTCTCTCTAAGCCGCACCCTTTTCCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCGGAGGAGAAACTCCATGATTCTAGCTCAATGTCCCCTTCCCCTTCAATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCTTGCCAGAGCATGCTTAGCTCTCCACACATGTGGGGTCTTGTGATCGTAACCGCTGGATGGGATGGACGAATCAGAACATTTCTCAACTACGGTTTACCTATTCGATTATGA 2199 42.75 MMDLIHCEEEIEQFYDTREEISSVSDWGSDCSENCSTSFGDDSDVPENLRYVGWIRNLESVCERRNKFFKWMGLDLDQNFDDRDEEEGDSFRRVYRDRILEDCGTVLRLSGSEGELSSSLTISSMSNEAPESSGNVSVEENHACTIRNLDNGTEFIVDSFSQDGVLSMLREVGSNRSFSFDEFERNIGQSPLVQQFFRKNVEKAGPIVNPRKEAKKGWLRKLGAVACIVDNGEGTMKNGVFNSSSKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGVVRVWQVIEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDLPKETVGKMKLKRSSSTACVIFPPKLFRILEKPLHEFLGHSGELLLSSSVDKTVRLWQLGCDTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVVDYIDIREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGSDVICKFKGLRNGGNKMSASFTSDGKHIVSASEENVYVWNYNCKDKASRKKKIWSSESFFSRSATIAIPWSGVKITPEPPLSPTRVCDTAGSIPEMEPKYPDDDGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSMSPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGLPIRL 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1590257 1595263 + Lsi09G001520.1 Lsi09g00152 669765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00152 732 MobiDBLite consensus disorder prediction 624 648 - -
Lsi09g00152 732 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 732 - -
Lsi09g00152 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 440 - -
Lsi09g00152 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 306 IPR001680 GO:0005515
Lsi09g00152 732 Gene3D - 261 333 IPR015943 GO:0005515
Lsi09g00152 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 306 - -
Lsi09g00152 732 MobiDBLite consensus disorder prediction 629 645 - -
Lsi09g00152 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 440 IPR001680 GO:0005515
Lsi09g00152 732 SMART WD40_4 532 572 IPR001680 GO:0005515
Lsi09g00152 732 SMART WD40_4 491 531 IPR001680 GO:0005515
Lsi09g00152 732 SMART WD40_4 400 439 IPR001680 GO:0005515
Lsi09g00152 732 SMART WD40_4 441 480 IPR001680 GO:0005515
Lsi09g00152 732 SMART WD40_4 266 305 IPR001680 GO:0005515
Lsi09g00152 732 SMART WD40_4 369 397 IPR001680 GO:0005515
Lsi09g00152 732 Pfam WD domain, G-beta repeat 402 438 IPR001680 GO:0005515
Lsi09g00152 732 Pfam WD domain, G-beta repeat 272 304 IPR001680 GO:0005515
Lsi09g00152 732 Pfam WD domain, G-beta repeat 371 396 IPR001680 GO:0005515
Lsi09g00152 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 398 IPR001680 GO:0005515
Lsi09g00152 732 Gene3D - 369 603 IPR015943 GO:0005515
Lsi09g00152 732 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Lsi09g00152 732 PRINTS G protein beta WD-40 repeat signature 426 440 IPR020472 -
Lsi09g00152 732 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Lsi09g00152 732 SUPERFAMILY WD40 repeat-like 269 722 IPR036322 GO:0005515
Lsi09g00152 732 PANTHER WD REPEAT DOMAIN 44 7 732 IPR040324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00152 - - - csv:101204856 1388.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01138 Lsi-Chr1:9572277 Lsi09g00152 Lsi-Chr9:1590257 6.00E-112 dispersed
Lsi04g01318 Lsi-Chr4:20966338 Lsi09g00152 Lsi-Chr9:1590257 2.16E-122 dispersed
Lsi09g00011 Lsi-Chr9:100654 Lsi09g00152 Lsi-Chr9:1590257 6.00E-119 dispersed
Lsi09g00152 Lsi-Chr9:1590257 Lsi01g00842 Lsi-Chr1:6715721 1.51E-13 dispersed
Lsi09g00152 Lsi-Chr9:1590257 Lsi02g02285 Lsi-Chr2:29422484 6.58E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00152 Lsi_Chr09 FPKM 6.149858 5.895278 5.788213 5.84983 6.520323 5.995881 6.308023 9.329009 9.213797 9.48527