Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00162 ATGACTTATAATGGAGGAGATTCGTATAGGCAGTCTTGTGTTTCGGCCCAAGGCTCTGGAAGAGATGATCTGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTCTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCCTCAAAGATTCTATGTCGTGTAATTCATATCGAGCCGCTGGCGGATCACGAGTCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAAATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTTCATGGATATGAGTGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGTTACGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCATTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTCTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCACTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAGCCCGTTTCAAAAAACAAAAGGCCTCGACAACCAACTCCAGTTCATGATGGTGCTGATTTGACTAAGCCAGCACATTGGGATTCTGGATTGGCACAGACACATAATGGTAAACAATGCAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGCTCATGTGTATCAAGAACACAGACTGATACCTGGCTATCTTCTACCCAATCCAATAGTTATAAACACCCAGCACATGATATGGTGCAGGATTATAAAACTGTCCCTGGCGGTGGTTGGTCCTTTCAGTTAGGAACTTCAACCTCTCACTTGGTTAAGTTAACTGATGATCAAATACTTGACCCCACTGAAAATGGGAGGAACGGTGAAACAGTAGCTAGTTGCAGATTGTTTGGTATTGATCTCAATCATTTGGCTGCTGAGAAAGAATCTTCTCAACCAAGCAGCGTGTCTTGCGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCCGATCCAAAATCTGACAACTTGGACGGATCTATAGAAAGAAAATCAGAACCATCACAAGGATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCTGCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAGGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACTCCAATAGAAGTTGAAGGGGACGTAGTACTCCCGGATTCCCCTGCAGTTTGA 2076 44.7 MTYNGGDSYRQSCVSAQGSGRDDLYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLADHESDEVYAQITLMPESNQNEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAFNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPVHDGADLTKPAHWDSGLAQTHNGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRTQTDTWLSSTQSNSYKHPAHDMVQDYKTVPGGGWSFQLGTSTSHLVKLTDDQILDPTENGRNGETVASCRLFGIDLNHLAAEKESSQPSSVSCDTDGRISTLSVAQSDPKSDNLDGSIERKSEPSQGSLKEIQCNQSSSANTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPIEVEGDVVLPDSPAV 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1700937 1707739 + Lsi09G001620.1 Lsi09g00162 669775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00162 691 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Lsi09g00162 691 Gene3D - 290 363 - -
Lsi09g00162 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi09g00162 691 CDD B3_DNA 127 229 IPR003340 GO:0003677
Lsi09g00162 691 MobiDBLite consensus disorder prediction 520 584 - -
Lsi09g00162 691 SMART B3_2 129 231 IPR003340 GO:0003677
Lsi09g00162 691 Gene3D - 575 668 - -
Lsi09g00162 691 PANTHER AUXIN RESPONSE FACTOR 9 19 678 - -
Lsi09g00162 691 MobiDBLite consensus disorder prediction 557 583 - -
Lsi09g00162 691 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Lsi09g00162 691 MobiDBLite consensus disorder prediction 360 374 - -
Lsi09g00162 691 MobiDBLite consensus disorder prediction 360 411 - -
Lsi09g00162 691 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Lsi09g00162 691 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi09g00162 691 MobiDBLite consensus disorder prediction 520 549 - -
Lsi09g00162 691 Pfam AUX/IAA family 626 658 IPR033389 -
Lsi09g00162 691 Pfam AUX/IAA family 571 616 IPR033389 -
Lsi09g00162 691 Gene3D - 126 231 IPR015300 -
Lsi09g00162 691 SUPERFAMILY CAD & PB1 domains 575 656 - -
Lsi09g00162 691 ProSiteProfiles PB1 domain profile. 580 661 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02037 Lsi-Chr2:26424809 Lsi09g00162 Lsi-Chr9:1700937 0 dispersed
Lsi07g00734 Lsi-Chr7:7957652 Lsi09g00162 Lsi-Chr9:1700937 0 dispersed
Lsi09g00162 Lsi-Chr9:1700937 Lsi11g00096 Lsi-Chr11:993183 0 dispersed
Lsi09g00162 Lsi-Chr9:1700937 Lsi01g00116 Lsi-Chr1:1225345 6.07E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25860 PF02362 B3 1.90E-21 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00162 K14486 - csv:101209208 1314.67