Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00168 ATGGGATGGTTTGAAGCAGTTTTGGTGGAATTACTGCATCCTCCAGTGAAGGCCTTCCATAGATTGTATTTCCACAAGATCATCGCCATGGCTGGCTCCTGGAGAGCTCGAGGATCTCTGATCGTCCTAGCAATCGTTTTCTTCGGTAATATCTGGCTTGTTCTTGTTTCTTTTGCTTTAGGGGAAGTGTTTAGATCTTGGTTGTGTGAGTTTTGGTTTTCTAGCGGTGTTGTTCTAGGAGATTGTAGTATGATTGTTTTTACTGTAATGGCTATTTGTTATGGAGTTTTAGTCATAGATCGAGGAGTGTTTTCCTTGGCATTTGTTGATTTTGTTCATTTTAGACGGGATAATGGTGGCTCTATGGATCTCGGTACTGTTTTTTTGGTGAATGGCTTTGAGATTCAAGGCGATCTATGCGACATTCTTTGGATTAGAATGTTGGGAAGCATTTGGTTTTATCTTTTTGGACAAATGTATGAGTCTATTGGAGGACTGTTCGCAATTTCCATTGCGAAAGAAGAAGCAACAAAATTGGGGACTGTCATTGGGATAGATTTGGGAACAACTTATTCTTGTGTTGGAGTCTACAAGAACGGACATGTAGAAATTATAGCGAATGACCAAGGAAATCGTATCACCCCTTCTTGGGTCGCTTTCACTGATAGTGAGAGATTGATCGGTGAGGCTGCGAAGAATCAAGCAGCTGTTAACCCTGAAAGAACAATCTTTGATGTCAAGAGACTTATCGGTAGAAAGTTTGATGATAAAGAGGTTCAAAAAGACATGAAGCTTGTTCCTTACAAGATTGTCAATAAGGATGGAAAGCCTTACATTCAAGTAAAGATCAAGGATGGTGAGACCAAGGTTTTCAGCCCTGAGGAAGTCAGTGCTATGATTCTAACTAAGATGAAGGAAACAGCCGAAGCATTCCTTGGCAAGAAAATCAAAGACGCCGTCGTCACTGTTCCAGCTTACTTCAATGATGCCCAAAGGCAAGCAACCAAGGATGCCGGTATTATTGCTGGCCTCAACGTTGCTAGAATAATCAATGAGCCCACTGCGGCTGCCATTGCGTATGGTTTGGATAAGAAAGGTGGCGAAAAGAATATTCTTGTATTTGACCTTGGTGGTGGTACTTTTGATGTCAGTATCTTGACCATTGACAATGGTGTGTTTGAGGTTCTTGCCACAAACGGAGACACTCATTTGGGAGGTGAGGACTTTGACCAGAGAATTATGGAATACTTCATCAAATTGATTAAGAAGAAGCACGGAAAGGACATCAGCAAGGACAACAGAGCTCTTGGAAAGCTTAGAAGGGAATGTGAGCGTGCCAAGAGGGCATTGAGTAGCCAGCACCAGATCCGCGTTGAGATTGAATCCCTCTTTGATGGCACTGACTTCTCTGAGCCATTGACCAGAGCTCGTTTTGAGGAGTTGAACAATGACTTGTTCAGAAAGACCATGGGACCAGTGAAGAAAGCCATGGAAGATGCAGGTTTGGAGAAGAACCAAATTGATGAGATTGTCCTTGTTGGTGGTAGCACCAGGATTCCCAAAGTTCAACAGCTCCTCAAAGATTACTTTGAAGGCAAAGAACCTAACAAGGGTGTGAACCCTGATGAGGCCGTTGCTTATGGTGCTGCTGTTCAAGGAAGTATCTTGAGTGGAGAGGGCGGTGAAGAAACCAAAGATATCCTTCTTCTTGATGTTGCCCCTCTTACCCTTGGAATTGAAACTGTTGGTGGAGTGATGACCAAGTTGATCCCCAGAAACACTGTCATCCCAACCAAGAAATCTCAGGTCTTCACAACTTACCAAGATCAGCAGACCACCGTCTCCATTCAGGTACTTCAATTGTCAATAAAACGGTATCTCAAAATCTCGAAAACGTTCTATGTTCTTCATATCATTTTCTTGGTCTTCGAAGGTGAGAGGAGTCTCACTAAAGACTGCAGGAACCTTGGAAAATTCGATCTAACTGGAATTCCTCCAGCACCAAGGGGTACCCCACAAATTGAGGTCACCTTTGAGGTTGATGCCAATGGTATCCTGAACGTTAAGGCCGAAGACAAGGGCACTGGTAAATCCGAGAAGATCACCATCACCAACGACAAGGGTCGGTTGAGCCAGGAGGAGATCGACCGGATGGTTCGTGAAGCTGAGGAGTTCGCAGAGGAGGACAAGAAGGTAAAGGAGAGAATTGATGCCCGTAACAGCCTGGAAACCTATATCTACAACATGAAAAACCAGATCAATGACAAGGACAAGCTTGCTGACAAGCTTGAATCTGATGAGAAGGAGAAGATTGAGACCGCCGTGAAGGACGCTCTCGAATGGCTCGACGATAACCAAAGCGCCGAAAAGGAAGACTATGAGGAGAAGCTCAAGGAGGTCGAGGCCGTCTGCAACCCCATCATCACCGCGGTCTACCAGAGGTCCGGTGGCGCTCCTGGCGGTGAATCGGCAGAAGACGATGAGTCTCATGATGAGCTTTAA 2502 44.68 MGWFEAVLVELLHPPVKAFHRLYFHKIIAMAGSWRARGSLIVLAIVFFGNIWLVLVSFALGEVFRSWLCEFWFSSGVVLGDCSMIVFTVMAICYGVLVIDRGVFSLAFVDFVHFRRDNGGSMDLGTVFLVNGFEIQGDLCDILWIRMLGSIWFYLFGQMYESIGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEVSAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSSQHQIRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFEGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVLQLSIKRYLKISKTFYVLHIIFLVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSLETYIYNMKNQINDKDKLADKLESDEKEKIETAVKDALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGESAEDDESHDEL 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1751792 1759349 + Lsi09G001680.1 Lsi09g00168 669781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00168 833 MobiDBLite consensus disorder prediction 812 833 - -
Lsi09g00168 833 Coils Coil 749 769 - -
Lsi09g00168 833 Gene3D - 740 814 IPR029048 -
Lsi09g00168 833 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 567 708 IPR029047 -
Lsi09g00168 833 SUPERFAMILY Actin-like ATPase domain 367 558 IPR043129 -
Lsi09g00168 833 PANTHER LUMINAL-BINDING PROTEIN 167 821 - -
Lsi09g00168 833 CDD HSPA5-like_NBD 180 554 IPR042050 -
Lsi09g00168 833 PRINTS 70kDa heat shock protein signature 379 389 - -
Lsi09g00168 833 PRINTS 70kDa heat shock protein signature 539 559 - -
Lsi09g00168 833 PRINTS 70kDa heat shock protein signature 181 194 - -
Lsi09g00168 833 PRINTS 70kDa heat shock protein signature 319 339 - -
Lsi09g00168 833 PRINTS 70kDa heat shock protein signature 566 585 - -
Lsi09g00168 833 PRINTS 70kDa heat shock protein signature 231 239 - -
Lsi09g00168 833 PRINTS 70kDa heat shock protein signature 209 221 - -
Lsi09g00168 833 PRINTS 70kDa heat shock protein signature 507 523 - -
Lsi09g00168 833 SUPERFAMILY Actin-like ATPase domain 180 364 IPR043129 -
Lsi09g00168 833 PANTHER HEAT SHOCK PROTEIN 70KDA 167 821 IPR013126 GO:0005524|GO:0140662
Lsi09g00168 833 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 737 820 IPR029048 -
Lsi09g00168 833 ProSitePatterns Heat shock hsp70 proteins family signature 2. 373 386 IPR018181 -
Lsi09g00168 833 Gene3D - 365 539 - -
Lsi09g00168 833 Gene3D Actin; Chain A, domain 4 405 488 - -
Lsi09g00168 833 Coils Coil 429 449 - -
Lsi09g00168 833 Coils Coil 783 803 - -
Lsi09g00168 833 Coils Coil 715 735 - -
Lsi09g00168 833 ProSitePatterns Heat shock hsp70 proteins family signature 3. 510 524 IPR018181 -
Lsi09g00168 833 ProSitePatterns Heat shock hsp70 proteins family signature 1. 185 192 IPR018181 -
Lsi09g00168 833 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 631 739 IPR029047 -
Lsi09g00168 833 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 561 626 IPR029047 -
Lsi09g00168 833 Pfam Hsp70 protein 642 813 IPR013126 GO:0005524|GO:0140662
Lsi09g00168 833 Pfam Hsp70 protein 182 622 IPR013126 GO:0005524|GO:0140662
Lsi09g00168 833 Gene3D - 183 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00168 Lsi-Chr9:1751792 Lsi11g00825 Lsi-Chr11:10226844 0 dispersed
Lsi09g00168 Lsi-Chr9:1751792 Lsi01g01415 Lsi-Chr1:12295409 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00168 K09490 - csv:101207505 1244.95