Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00170 ATGACGGAGGTGGCGAGCTCAGTGGTGCACGAGGTCCTTGGACACAGAACTCAGGACGTGGATCAGCCCATCATCGACTACATCGTCAATGTTCTTGCGGACGAGGATTTCGAGTTCGGCGAGGATGGCGAAGGAGCTTTTGACGCTCTCGGTGAGCTCCTCGTTGGTGCCGGCTGCGTTTCCGACTTCGCTGAGTGCCGCACGGTTTGTAGTAAAATCTCAGAAAAGTTTGGGAAGCATGGAATGGTCAAAACTAAACCAACCGTGCGCAGTCTTGTAACACCCATGAGAATGAATGAAGGAATGGATGAAGAGGAGGTTCCCAAGAAGAAGCCTGAAGTTACTGACGGTCCTGTACTGACTGAGCGTGACCGATTAAAACTAGAGAGGAGAAAGAGGAAGGAGGAACGTCAAAGAGAGGCGCAATACCAAATACATTTAGCTGAAATGGAAGCGGCGAGGGCAGGAATGCCTGTAGTATGTGTTAATCACGATAGTGGCACTGGTCCTGCAGTCAAAGATATTCATATGGAGAATTTCAACATTTCTGTTGGCGGTCGTGATCTCATTGTGGATGGTACAGTCACACTATCATTTGGAAGGCATTATGAAAGGAGGCTTTGTGCTGGGGGAGGAATAAGATATCGAGAAAGAAGGTTCTCCTCTAAAGGGAACCATTTCTTACTGCAATTGGCAACCGGCTTTGTGTTCCATGCTATTGAAGGGAGGGGAGGATCTTGTGTTGGTGACAGCCAAGTTAAATGGAGAACTGGGAGGGAGACATATGGTGAAGTTTCAGCTGAGGGAGAGAATCAATGGTCTCTGACTGCAGGTCTTATAGGAAGAAATGGTACGGGGAAGACAACTTTTCTTAGGTATATGGCTATGCATGCAATTGATGGTATTCCTAAGAATTGCCAGATATTACATGTAGAGCAGGAAGTTGTTGGTGATGATACTTCCGCGTTGCAGTGTGTTTTAAATTCAGATATTGAAAGAACCCAACTTTTGGGAGAGGAAGCTCGTATTCAAGCCCTACAGAGAGAGGTGGAGTTTGATGATGGAAAAAGCAATGCAGCTAGTGACAAAGATGGCATTGCACAAAGGCTTGAAGAGATATACAAAAGACTTGAGTTTATTGATGCTTATTCTGCAGAGGCACGTGCTGCTTCCATTCTTGCGGGCCTGAGTTTCTCCTCAGATATGCAGCAGAAAGCAACCAAAACGTTTTCAGGAGGTTGGAGAATGCGTATTGCTCTTGCACGTGCATTGTTCATAGAGCCGGATTTGTTGCTACTTGATGAACCCACAAACCATCTTGATCTTCATGCTGTTCTCTGGTTGGAATCCTACCTTGTGAAATGGCCTAAAACATTCATTGTTGTTTCTCATGCTAGAGAATTTTTGAACACGGTGGTCACGGACATCCTTCATCTTCAAGGGCAAAAATTAATGACTTATAAAGGTAACTATGATACATTTGAGAGGACAAGAGAAGAGCAACTTAAGAACCAACAGAAAGCATTTGAGGCAAATGAACGGACACGATCTCATATGCAGTCGTTTATCGATAAGTTCAGATACAATGCAAAGAGGGCATCCCTTGTTCAATCAAGGATCAAGGCTTTGGAGCGAATTGGTCATGTGGATGAAGTTATAAATGATCCAGAGTACCATTTGATATGTTCTATATCACAGCTGCACCACATTTCTCTTATTAGACTTCCAACTTCTTCTGCAGTGGTTGGTCCAAATGGCATTGGTAAATCGACTATACTCAAATTAATTGCAGGGGAACTTCAACCTACCTCTGGAACTGTTTTTCGTTCAGCTAAGGTTCGAATAGCTGTCTTTAGTCAGCACCATGTTGATGGGTTAGACTTGTCTTCAAATCCACTTCTTTACATGATGCGTTGCTTCCCAATAATATTTCAAGGCGTGCCAGAACAGAAGCTTCGAGCTCACTTAGGTTCATTTGGTGTAACCGGAAATCTTGCTCTTCAGCCTATGTACACGCTATCTGGTGGTCAGAAAAGCAGAGTCGCTTTTGCGAAGATCACATTCAAAAAGCCACACATAATATTGCTCGACGAGCCATCCAATCATCTGGATCTGGATGCGGTGGAGGCTCTGATTCAAGGTCTTGTATTGTTCCAAGGAGGCATTCTCATGGTTAGTCACGATGAACATCTGATATCGGGAAGTGTTGAGGAGCTATGGGCAGTGTCTGAAGGGTGCAGAAACCATCTCTTTCATTTTGATTCACGAATGAATGGGAAAAATTTGGATTCTGAGAACTGGGTTTTGACTATCGGAAGTGGAGTGTTGTTGAAGCTCACTACAGGGTTTGATTTGAAATGGCGGAAGCTTTCGATGACGAAACCGAACAGACAGTTTCTATTCAGGACGGATTTAGTTTTGGGAGGTGATGAAGGAAAGGAATGTACTTACAGCAAGGGTTATATGAAGAGACAAGCCATTTTCTCATGTCTAACTTGTACCCCTGATGGAAATGCTGGAGTTTGCACAGCTTGTAGCTTGTCATGCCATGATGGACATGAGATTGTGGAATTATGGACCAAAAGGAACTTTAGGTGCGACTGTGGAAATTCAAAATTTGGAGATTTCGTCTGCAAGCTGTTCTCAAACAAAGATGTAGAAAATTCCAACAATTCGTATAATCATAATTTTAAAGGATCATACTGCATATGCAATCGCCCTTATCCCGATCCAGACGTCGAAGAGCAGGTGGAGATGATTCAGTGCTGTATGTGTGAGGATTGGTTCCATGAGGAACATCTTGGTCTCAGTTCCATAGATGAGATTCCGAGAGATGAAGAAGGGGAGCCCCTGTATGAGGATTTCATATGCTCGGCATGTTCTGCAGTTTGTTCTTTTCTGAGTCAGTATCCTTTGTCTATTTGGGCTGTAGGAAGGCACTCTGATAGCTCCTTGGACGTTAGCAACAAAAATGATGCTCCAGAACACACAGTTCCAGCTAGTACATCTGTAAAACATGATGATGATGTTAATCCTCATGATTCTGCCAATGTGGATCTTACACTAGCCACTGACAAATCTGCTGGAAAGGACAGCTTGCTCGGTGAACTTCCTGAGAAAAATCCTAGTTCTAGTGAATCAGTTAAAGATAACAATCAAACTGATAGTTGTGTGCTTGGAACTTCTTCATCTGCTTCCATAATCGTTGAAAACAAGCCAATGTTTCTTTCAAAGAATTGGAGGAGTGCCTTGTGCAGATGTGAAAAATGCATCAATAATTACAAGCTGAAGAATATCACTTTCCTGCTAGATGAAGAGGACTCCATTGCTGAATATGAGAAAATGGCAAAACAGAAGAGGGAAGAGAAATTACTGCAACAAGAGGGTGCTGAGTCAAAGTTGTTTGATAACCTTGGCCACGTGGAGAAAATTGAGATTCTTAATGGCATTGCAGATATGAAGGATGAGATTCGTACATTCCTGGAATCGTTCGACTCGTCGAAGCCTATTACATCTGCAGATATCCACCAGGTTTTCGAGAATCTAGCTAAAAAGAGACGTCGTACTGAATGA 3573 43.27 MTEVASSVVHEVLGHRTQDVDQPIIDYIVNVLADEDFEFGEDGEGAFDALGELLVGAGCVSDFAECRTVCSKISEKFGKHGMVKTKPTVRSLVTPMRMNEGMDEEEVPKKKPEVTDGPVLTERDRLKLERRKRKEERQREAQYQIHLAEMEAARAGMPVVCVNHDSGTGPAVKDIHMENFNISVGGRDLIVDGTVTLSFGRHYERRLCAGGGIRYRERRFSSKGNHFLLQLATGFVFHAIEGRGGSCVGDSQVKWRTGRETYGEVSAEGENQWSLTAGLIGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTSALQCVLNSDIERTQLLGEEARIQALQREVEFDDGKSNAASDKDGIAQRLEEIYKRLEFIDAYSAEARAASILAGLSFSSDMQQKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDILHLQGQKLMTYKGNYDTFERTREEQLKNQQKAFEANERTRSHMQSFIDKFRYNAKRASLVQSRIKALERIGHVDEVINDPEYHLICSISQLHHISLIRLPTSSAVVGPNGIGKSTILKLIAGELQPTSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPIIFQGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWAVSEGCRNHLFHFDSRMNGKNLDSENWVLTIGSGVLLKLTTGFDLKWRKLSMTKPNRQFLFRTDLVLGGDEGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFGDFVCKLFSNKDVENSNNSYNHNFKGSYCICNRPYPDPDVEEQVEMIQCCMCEDWFHEEHLGLSSIDEIPRDEEGEPLYEDFICSACSAVCSFLSQYPLSIWAVGRHSDSSLDVSNKNDAPEHTVPASTSVKHDDDVNPHDSANVDLTLATDKSAGKDSLLGELPEKNPSSSESVKDNNQTDSCVLGTSSSASIIVENKPMFLSKNWRSALCRCEKCINNYKLKNITFLLDEEDSIAEYEKMAKQKREEKLLQQEGAESKLFDNLGHVEKIEILNGIADMKDEIRTFLESFDSSKPITSADIHQVFENLAKKRRRTE 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1766909 1782575 + Lsi09G001700.1 Lsi09g00170 669783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00170 1190 MobiDBLite consensus disorder prediction 1038 1057 - -
Lsi09g00170 1190 ProSitePatterns ABC transporters family signature. 410 424 IPR017871 GO:0005524
Lsi09g00170 1190 Pfam ABC transporter 276 438 IPR003439 GO:0005524
Lsi09g00170 1190 SMART PHD_3 901 961 IPR001965 -
Lsi09g00170 1190 MobiDBLite consensus disorder prediction 985 1057 - -
Lsi09g00170 1190 Coils Coil 1102 1122 - -
Lsi09g00170 1190 Pfam Putative zinc finger in N-recognin (UBR box) 815 879 IPR003126 GO:0008270
Lsi09g00170 1190 CDD ABCF_EF-3 580 745 - -
Lsi09g00170 1190 Pfam ABC transporter 477 552 IPR032781 -
Lsi09g00170 1190 SUPERFAMILY FYVE/PHD zinc finger 888 975 IPR011011 -
Lsi09g00170 1190 ProSiteProfiles Zinc finger UBR-type profile. 813 883 IPR003126 GO:0008270
Lsi09g00170 1190 SMART push_1 813 882 IPR003126 GO:0008270
Lsi09g00170 1190 ProSitePatterns ABC transporters family signature. 673 687 IPR017871 GO:0005524
Lsi09g00170 1190 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 253 506 IPR003439 GO:0005524
Lsi09g00170 1190 Pfam ABC transporter 579 701 IPR003439 GO:0005524
Lsi09g00170 1190 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 121 203 - -
Lsi09g00170 1190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 897 963 IPR013083 -
Lsi09g00170 1190 PANTHER NON-TRANSPORTER ABC PROTEIN 278 745 - -
Lsi09g00170 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 745 IPR027417 -
Lsi09g00170 1190 Gene3D - 273 532 IPR027417 -
Lsi09g00170 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 510 IPR027417 -
Lsi09g00170 1190 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 547 769 IPR003439 GO:0005524
Lsi09g00170 1190 CDD PHD_UBR7 901 960 - -
Lsi09g00170 1190 PANTHER NON-TRANSPORTER ABC PROTEIN 121 203 - -
Lsi09g00170 1190 SMART AAA_5 273 484 IPR003593 -
Lsi09g00170 1190 SMART AAA_5 575 746 IPR003593 -
Lsi09g00170 1190 CDD ABCF_EF-3 410 483 - -
Lsi09g00170 1190 Gene3D - 569 758 IPR027417 -
Lsi09g00170 1190 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 278 745 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00170 K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 - csv:101207993 833.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00170 Lsi-Chr9:1766909 Lsi09g01823 Lsi-Chr9:27030386 1.07E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g134 . . . . . . Bma07g01685 . . . Cma02g00914 Cma15g01281 Car02g00665 Car15g01155 . . Cpe05g00796 . . . . . . . . . . . . . . . Cone12ag0248 . . . Csa05g00199 Chy09g01298 . . Blo19g00368 . Bda09g00014 . . . . . Cmo02g00921 Cmo15g01350 . . . . . Cpe13g00108 Bhi12g00138 . . Lac11g1984 Hepe06g1474 . Lcy12g1566 Cla01g00182 Cam01g0186 Cec01g0183 Cco01g0186 Clacu01g0183 Cmu01g0179 Cre09g2326 Lsi09g00170 . . Cme09g01844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011577 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00170 Lsi_Chr09 FPKM 43.368511 47.994469 3.129342 3.62715 13.691718 11.558211 14.822332 13.851274 14.323278 12.111655